Pairwise Alignments

Query, 702 a.a., chemotaxis protein CheA (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 704 a.a., CheA signal transduction histidine kinases (RefSeq) from Shewanella sp. ANA-3

 Score =  998 bits (2579), Expect = 0.0
 Identities = 534/710 (75%), Positives = 593/710 (83%), Gaps = 14/710 (1%)

Query: 1   MSINMAEFHQVFFEESHEHLENMEQLLIAINLQSPDPEELNTIFRAAHSIKGGSGIFGFT 60
           MSINMAEFHQVFFEESHEHLENMEQLL+A++L +PDPEELNTIFRAAHSIKGGSGIFGFT
Sbjct: 1   MSINMAEFHQVFFEESHEHLENMEQLLLALDLAAPDPEELNTIFRAAHSIKGGSGIFGFT 60

Query: 61  ALSSVTHVMENLLDKVRKGTFELSSGIIDLLLKTVDTLSHILSLYREEEPIDWQQVEFAK 120
           AL+SVTHVMENLLDK RKGTFELSS +IDLLL+TVDTLSHIL+LYREEEPIDWQQVEFAK
Sbjct: 61  ALTSVTHVMENLLDKTRKGTFELSSSVIDLLLRTVDTLSHILNLYREEEPIDWQQVEFAK 120

Query: 121 NQLVAALNGDPFLTTSPEAIPATPTKTEITQTAVVVSDASHQDDIGFGFFEDDVELTLAI 180
           NQLVAALNG+PF T + + +     +    + A V ++++ Q+D  FGFFED+VEL L  
Sbjct: 121 NQLVAALNGEPFSTQAAKVVETANQE----KPAAVSTNSASQEDASFGFFEDEVELGLVD 176

Query: 181 ENQDFGFFDEAFTAKEISVEDINKTLLDSQLVTNTEPDDDLGFGFFESLTPESVDSEINA 240
           E + FGFFDEA+TAKEI VEDI+    DS        DD+LG+GFFESLT ES  +E++A
Sbjct: 177 ETEHFGFFDEAYTAKEIRVEDIHSNAADSATHAAVS-DDELGYGFFESLTAESFANELDA 235

Query: 241 LVHIQANKAIAAIEPLSKPVNSPSVPKIPRYTGNTAESTKVAPADPVDPSPVLNKSVASG 300
           L     N  +   +P+ K +   S  K  R      +S ++      D        +AS 
Sbjct: 236 LSTPIQNVQVTD-KPVYKTLVEQSDAKTARSKKPPKDSAQLKSQATTDVKLEAQTHLASS 294

Query: 301 -----TKSTPTAAT---KKGNTSTQDATLRVETSKIDTLVNLAGELVITQSMLTLIGNEI 352
                T +TP A++   KK +TSTQDATLRVETSKIDTLVNLAGELVITQSMLTLIGNE+
Sbjct: 295 PAMNTTSATPAASSQVAKKASTSTQDATLRVETSKIDTLVNLAGELVITQSMLTLIGNEL 354

Query: 353 SGELGERLKTALVELERNTREMQEAVMSVRMLPVSFVFNRFHRLVRDLSDQLGKNVNLVI 412
            GELGERLKTAL ELERNTREMQEAVMSVRMLPVSFVFNRFHRLVRDLS+QLGKNV LVI
Sbjct: 355 GGELGERLKTALNELERNTREMQEAVMSVRMLPVSFVFNRFHRLVRDLSEQLGKNVTLVI 414

Query: 413 EGGNTEIDKGMIEKLVDPLTHLVRNSLDHGIEKPEVRRLLGKAEIAQLSLRASQRGGNIV 472
           EGGNTEIDKGMIEKLVDPLTHLVRNSLDHGIEKPE R   GK+E+  LSL+ASQRGG+IV
Sbjct: 415 EGGNTEIDKGMIEKLVDPLTHLVRNSLDHGIEKPEKRVAAGKSEVGVLSLKASQRGGSIV 474

Query: 473 IAVHDDGAGLHREKILQKARENNMSVTDNMPDKQIWQLIFAAGFSTAKEITDVSGRGVGM 532
           IAVHDDG GL+RE+ILQKAREN M++ +NM DKQ+WQLIFAAGFSTA E+TDVSGRGVGM
Sbjct: 475 IAVHDDGGGLNRERILQKARENGMALPENMTDKQVWQLIFAAGFSTAAEVTDVSGRGVGM 534

Query: 533 DVVRRNIEALGGRIDIDSVAGQGATFEIQLPLTLAIVDGMSVSVGKQIYILPLVHIIESI 592
           DVVR+NIEALGGRIDIDSVAG+GATFEIQLPLTLAIVDGMSVSVG QIYILPLVHIIESI
Sbjct: 535 DVVRKNIEALGGRIDIDSVAGEGATFEIQLPLTLAIVDGMSVSVGNQIYILPLVHIIESI 594

Query: 593 QPHTEQLKYLAQERLIRVREEYLPLLNLHQLMEITPFAKCPEEGIVVLLESNNKRFGLCV 652
           QP TEQLK+LA+ERL+RVREEYLPLLNL+QLMEI P AK PE GIVVLLESNNKRFGLCV
Sbjct: 595 QPQTEQLKFLAKERLLRVREEYLPLLNLYQLMEIEPQAKTPEAGIVVLLESNNKRFGLCV 654

Query: 653 DALVGQQQVVIKSLEKHYRRIPGVSGATIMGDGSVALILDVESLAQQIKN 702
           DALVGQQQVVIKSLEKHYRRIPGVSGATIMGDGSVALILDVESLA  IKN
Sbjct: 655 DALVGQQQVVIKSLEKHYRRIPGVSGATIMGDGSVALILDVESLALHIKN 704