Pairwise Alignments

Query, 476 a.a., sensor protein YgiY, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 447 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

 Score =  166 bits (421), Expect = 1e-45
 Identities = 112/432 (25%), Positives = 217/432 (50%), Gaps = 12/432 (2%)

Query: 42  ISSWLSTRDAKHQIEELFDAQMLQTAKMLELFYHDEADFKHPQSQPQVLHVPDSQVSSFA 101
           +S   S  +A+H++ E++DA++ Q+AK+L +     A+    ++Q +  ++    +   +
Sbjct: 3   VSFGFSYSNAQHEVGEVYDARLGQSAKLLLIATSVSANEFADRNQHEQFNLWMQHIQRLS 62

Query: 102 EKSDALKLA----YEHKLAFQIWSEAGQALVFSD-NIGREPLTKFEQGYSKRVFEGELWH 156
           + +D +       YE  L FQ + E G  L  SD ++    L +   G+S     GE W 
Sbjct: 63  KANDDVATLFGHPYEQYLLFQFYRE-GDLLFSSDTHLPALSLGRDANGFSDITLNGESWR 121

Query: 157 VFSFL---SAKYKVWIITAQQDEVRQELVSQIMHNAVIVPLIVVPLTLLIVSLLFYILFR 213
            F        K K +++ A++  +R E +++I  +  +  LI++   ++++ +L    F+
Sbjct: 122 YFQLSLPDQEKGKQYVLVAEKQSIRDEAINEIALSTALPQLILILCLIVVLVVLIERSFQ 181

Query: 214 PLKTFERELMARSPNDLTPLAMSLPK-ELVPVRLALNQYISSIARFIARERRFSADAAHE 272
           P++  +  +  RS + L  + +  P  EL+P+   LNQ ++ + +   RE+RF+  AAHE
Sbjct: 182 PIQALKAAIALRSIHKLDRIYVEKPTVELLPLVETLNQLLNELEQAWQREKRFTRMAAHE 241

Query: 273 LKTPLSVIKLHQQGLEGLVGDDPAQHIHLAAIDAGVKHMSHTVEQLLLLARVDSIAELNV 332
           LKTPL+V++++ +        +  +   L  I  G++     + QLL+LA+V+S   L  
Sbjct: 242 LKTPLTVLRVNAENALRSTNQEQLKQ-DLERIFKGIERTDRLIHQLLMLAKVESTQTLRK 300

Query: 333 QSYALLPMVEDALNQLMPLITEYEWNIDVDA-GLILKCDRFYWLVVLKNIIENACKYSPI 391
           Q   L  +++  +  L P+  + +  +        L  D     ++ KN+++NA +YS  
Sbjct: 301 QPVELANVIKQVIADLAPIAFKQDQQLSFHGESSRLWGDELLLGILFKNLLDNAIRYSGH 360

Query: 392 ETEISISAVQVAAGVEIKIADRGQGMTSEQIANATERFYRVNENEGIGAGLGLSICHHII 451
            ++I++        +E++++D G  +         + FYR N  +G GAGLG+SIC  I 
Sbjct: 361 SSQIAVELSDHDGEIEVRVSDTGAAIDDLTREKMFDNFYRANSQKGDGAGLGMSICRDIA 420

Query: 452 GLHQGQLTIASR 463
            LH GQ+ +  R
Sbjct: 421 ALHGGQVLLLPR 432