Pairwise Alignments

Query, 567 a.a., quinone-reactive Ni/Fe hydrogenase, large subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 561 a.a., NADH-ubiquinone oxidoreductase (NCBI) from Rhodospirillum rubrum S1H

 Score = 56.2 bits (134), Expect = 3e-12
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 40  RGIEVILKGRTPMD---VGLIVQRICGVCTYSHYRCGTEAVENALGIQIPLNAKYLRSLM 96
           RGIE +    T +D   V  + +R+CG+C + H  C   AVE+A GI+IP  AKY+RS+M
Sbjct: 213 RGIEKL--SDTVLDYNQVPFMAERVCGICGFVHSACYCMAVEDAAGIEIPPRAKYIRSIM 270

Query: 97  LTSLFMHDHIV 107
           +    +H H++
Sbjct: 271 MELERLHSHLL 281



 Score = 27.7 bits (60), Expect = 0.001
 Identities = 48/194 (24%), Positives = 77/194 (39%), Gaps = 27/194 (13%)

Query: 378 VEVGPLS-------CLLVSYARGNKVVVDAVN--ALLARTGLPVEALFTTLGRTAARMLQ 428
           V+VG LS       C++   AR + V +DA       A   L  +  F   G   AR L 
Sbjct: 369 VKVGVLSHEDARGICVVGPTARASGVHIDARADYPYAAFPDLDFKPSFHEGGDIWARTLV 428

Query: 429 TVIVAQEGLKTFDALLTNIQSDETTYVKPHIDPSKEYVGHAMMEAPRGMLSHWIRIKNGV 488
            V   +  +     ++T +   E       I   +E  G+ + EAPRG   H+++     
Sbjct: 429 RVDEVRSSVDLIKQMITKLPEGEIMAGFGPIPAWRE--GYGIAEAPRGECVHYVQTGK-- 484

Query: 489 IENYQAVVPTTWNAGPVDANGKIGPYEASLIGLKLEDPTKPLEVIRIIHSFDPCMACSVH 548
            +N     P  W         ++      L G+ + D   P+    II S DPC +C+  
Sbjct: 485 -DNR----PYRWRVRAA-TYPQLQAVPLMLKGMSIGD--FPI----IIGSIDPCFSCTER 532

Query: 549 VM--DFKGQALSEF 560
           V+  D K +A+  +
Sbjct: 533 VLTVDTKSKAIRTY 546