Pairwise Alignments

Query, 319 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

 Score =  268 bits (684), Expect = 2e-76
 Identities = 142/320 (44%), Positives = 205/320 (64%), Gaps = 3/320 (0%)

Query: 3   LKSPFLSGLQQEMRMRGYSIRTEKTYLYWIKAFINFHGKRHPETMGTEEVAQFLTFLANQ 62
           +KS FL  +++ M+ R Y+ +T + YL+WI  +I+FH K+HP  MG +EV +FLT+LA Q
Sbjct: 1   MKSQFLLSVREFMQTRYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQ 60

Query: 63  RNVAINTQKIALNALAYLYQKHLHHELG-DLGFCYATKQRYLPTVLSPSEISLILNELDG 121
             VA  TQ +ALN+L++LY++ L   L  ++ F  +  +R LP VL+  EI  +L  +D 
Sbjct: 61  GKVATKTQSLALNSLSFLYKEILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDP 120

Query: 122 RDRLIIELLYGSGLRVSECLRLRIQDIDIESASLTVRDGKGHKDRQTILSHRCAEKLTTY 181
           + +L I+LLYGSGLR+ EC+RLR+QDID +  ++ +  GKG K+R   L+      L   
Sbjct: 121 KHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQ 180

Query: 182 IEKAIKIQQDDNQQGI--GPSLPNALERKYPNAFRQHGWMFIFPSTSTCINPYTGTLCRH 239
           I  A +    D  Q    G  LP AL+ KYPNA  +  W ++FPS    ++P +  + RH
Sbjct: 181 IALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRH 240

Query: 240 HLHQSVIRKALGNAVRNIQMNKRVTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQ 299
           H++++V++KA+  + +   + K VTCHT RHSFATHLL+ G DIR+VQE LGH DV TTQ
Sbjct: 241 HMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQ 300

Query: 300 IYTHVLGQHFAGTTSPLDTL 319
           IYTHVL +  +G  SPL  L
Sbjct: 301 IYTHVLDRGASGVLSPLSRL 320