Pairwise Alignments

Query, 319 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score = 86.7 bits (213), Expect = 7e-22
 Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 40/208 (19%)

Query: 103 LPTVLSPSEISLILNE------LDGRDRLIIELLYGSGLRVSECLRLRIQDIDIESASLT 156
           LP  LS +++  +L+       L+ RD+ ++ELLY +GLRV+E + L ++++ +    + 
Sbjct: 113 LPKDLSEAQVEALLSAPDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVR 172

Query: 157 VRDGKGHKDRQTILSHRCAEKLTTYIEKAIKIQQDDNQQGIGPSLPNALERKYPNAFRQH 216
           V  GKG K+R   +     E + T++++   +   +    I                   
Sbjct: 173 VM-GKGGKERLVPMGENAIEWIETFLQQGRSLLLGEQTSDI------------------- 212

Query: 217 GWMFIFPSTSTCINPYTGTLCRHHLHQSVIRKALGNAVRNIQMNKRVTCHTFRHSFATHL 276
               +FPS+       T     H +    +       +  I + K ++ H  RH+FATHL
Sbjct: 213 ----VFPSSRG--QQMTRQTFWHRIKHYAV-------IAGIDVEK-LSPHVLRHAFATHL 258

Query: 277 LQAGRDIRSVQELLGHNDVSTTQIYTHV 304
           L  G D+R VQ LLGH+D+STTQIYTHV
Sbjct: 259 LNYGADLRVVQMLLGHSDLSTTQIYTHV 286