Pairwise Alignments

Query, 319 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 311 a.a., tyrosine recombinase XerC from Vibrio cholerae E7946 ATCC 55056

 Score = 96.3 bits (238), Expect = 9e-25
 Identities = 67/217 (30%), Positives = 111/217 (51%), Gaps = 42/217 (19%)

Query: 99  KQRYLPTVLSPSEISLILNELDG-----RDRLIIELLYGSGLRVSECLRLRIQDIDIESA 153
           KQR LP  L   E++ +L   D      RDR I+EL+YG+GLR++E + + I+D+++   
Sbjct: 115 KQRTLPKNLDVDEMAQLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDIKDVNLSEG 174

Query: 154 SLTVRDGKGHKDRQTILSHRCAEKLTTYIEKAIKIQQDDNQQGIGPSLPNALERKYPNAF 213
            + V  GKG+K+R+   + +  E    ++ K +K++       +  S   AL        
Sbjct: 175 EIRVI-GKGNKERKVWFAGQAQE----WVGKWLKLRSQ-----LADSAETAL-------- 216

Query: 214 RQHGWMFIFPSTSTCINPYTGTLCRHHLHQSVIRKALGNAVRNIQMNKRVTCHTFRHSFA 273
                             +   L     H+SV +K +    +   +   ++ H  RHSFA
Sbjct: 217 ------------------FVSKLGTRISHRSV-QKRMAEWGQKQAVASHISPHKLRHSFA 257

Query: 274 THLLQAGRDIRSVQELLGHNDVSTTQIYTHVLGQHFA 310
           TH+L++  ++R+VQELLGH +++TTQIYTH+  QH A
Sbjct: 258 THMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLA 294