Pairwise Alignments

Query, 315 a.a., NifR3/Smm1 family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 327 a.a., tRNA dihydrouridine(20/20a) synthase DusA from Vibrio cholerae E7946 ATCC 55056

 Score = 75.1 bits (183), Expect = 2e-18
 Identities = 76/278 (27%), Positives = 115/278 (41%), Gaps = 31/278 (11%)

Query: 2   RVILAPMEGVVDDLMRDILSSINPYDLLVTEFVRVVDQLLPEKVFLKLCPELLSGGYTPS 61
           R+ +APM    D   R     ++   LL TE V     +     FL          Y   
Sbjct: 6   RLSVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFL---------AYNQE 56

Query: 62  GTPVRVQLLGQEPNCMAENAMRAIELGSHGVDANFGCPAKMVNRSNGGAVLLQYPNTIHD 121
             PV +Q  G  P  +A  A  A E G   ++ N GCP+  V     GA L+  P+ + +
Sbjct: 57  EHPVALQFGGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAE 116

Query: 122 IVRAMRQAVPAEHPVTAKIRLGYEDKS----LFMENALAVYEAGATELAIHARS------ 171
            V AMR  V  + PVT K R+G +D+     L    A    + G  +  IHAR       
Sbjct: 117 CVAAMRAVV--DIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGL 174

Query: 172 --KVDGYKPPAYWEYITEVRERLP-IPVIANGEIWNRDDAKRCMQVTGCDSIMIGRGAIS 228
             K +   PP  +    +++   P + +  NG + + ++AK  + +   D +MIGR A  
Sbjct: 175 SPKENREIPPLDYPRAYQIKRDFPHLTIAVNGGVKSLEEAK--LHLQHLDGVMIGREAYQ 232

Query: 229 LPNLADTIKTG----ATPY-SWADTLQLMLSYTQRELS 261
            P L   +        TP    +  +  M+ Y +RELS
Sbjct: 233 NPYLLAEVDQQIFGLETPVKKRSQVIHEMMPYIERELS 270