Pairwise Alignments

Query, 315 a.a., NifR3/Smm1 family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 334 a.a., tRNA dihydrouridine(20/20a) synthase DusA from Synechocystis sp000284455 PCC 6803

 Score = 90.5 bits (223), Expect = 5e-23
 Identities = 81/277 (29%), Positives = 126/277 (45%), Gaps = 37/277 (13%)

Query: 5   LAPMEGVVDDLMRDILSSINPYDLLVTEFVRVVDQLLPEKVFLKLCPELLSGGYTPSGTP 64
           +APM    D   R  L  +  + LL TE +     L  ++  L          ++P   P
Sbjct: 15  VAPMMDHTDRHFRYFLRQLTRHTLLYTEMITAQAILHGDRQRLL--------NFSPEEKP 66

Query: 65  VRVQLLGQEPNCMAENAMRAIELGSHGVDANFGCPAKMVNRSNGGAVLLQYPNTIHDIVR 124
           V +QL G +P  +AE A    + G   ++ N GCP+  V   N GA L+  P+ +   V 
Sbjct: 67  VALQLGGDDPQLLAECARIGQDWGYDEINLNVGCPSDRVQSGNFGACLMAQPDLVAQCVS 126

Query: 125 AMRQAVPAEHPVTAKIRLG------YEDKSLFMENALAVYEAGATELAIHARS------- 171
           AM++AV  E PVT K R+G      YED   F+E    V  AG     +HAR        
Sbjct: 127 AMQKAV--EIPVTVKHRIGIDHRDSYEDLVHFVE---IVANAGCQRFTVHARKAWLQGLS 181

Query: 172 -KVDGYKPPAYWEYITEVRERLP-IPVIANGEIWNRDDAKRCMQVTGCDSIMIGRGAISL 229
            K +   PP  +E + ++++  P + +  NG I   +  ++   ++  D++M+GR A   
Sbjct: 182 PKENRTIPPLRYEDVYQLKKDFPQLLIEINGGITQTEQIQQ--HLSHVDAVMVGRAAYEN 239

Query: 230 PNLADTI------KTGATPYSWADTLQLMLSYTQREL 260
           P L  T+      KT   P S A+ ++ ML Y +  L
Sbjct: 240 PYLFATVDRDIYHKTNLVP-SRAEIIERMLPYVEERL 275