Pairwise Alignments

Query, 315 a.a., NifR3/Smm1 family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 333 a.a., tRNA dihydrouridine synthase DusB from Rhodopseudomonas palustris CGA009

 Score =  107 bits (266), Expect = 5e-28
 Identities = 74/229 (32%), Positives = 117/229 (51%), Gaps = 11/229 (4%)

Query: 3   VILAPMEGVVDDLMRDILSSINPYDLLVTEFVRVVDQLLPEKVFLKLCPELLSGGYTPSG 62
           V LAPM G+ D   R  ++ +    L+V+E     D +   ++ ++ C ++  G      
Sbjct: 12  VFLAPMTGITDVPFRRQVAELGA-GLVVSEMTASEDLVAGRRMSVRRCDKVGQG------ 64

Query: 63  TPVRVQLLGQEPNCMAENAMRAIELGSHGVDANFGCPAKMVNRSNGGAVLLQYPNTIHDI 122
            P  VQL G E   MAE A  A   G+  +D N GCPA+ V     G+ L++  +    +
Sbjct: 65  -PHVVQLAGCEARWMAEGARIAEAGGADIIDINMGCPARHVTGGLSGSALMRDLDHALTL 123

Query: 123 VRAMRQAVPAEHPVTAKIRLGYEDKSLFM-ENALAVYEAGATELAIHARSKVDGYKPPAY 181
           + A   AV    PVT K+RLG++D+S    E A    +AG   + +H R++   YK  A 
Sbjct: 124 IEATIGAVRV--PVTLKMRLGWDDRSRNAPELARRAQDAGVQLVTVHGRTRQQFYKGEAD 181

Query: 182 WEYITEVRERLPIPVIANGEIWNRDDAKRCMQVTGCDSIMIGRGAISLP 230
           W+ +  VR+ + IP++ NG+I     A   ++ +G D++MIGRGA   P
Sbjct: 182 WDAVRAVRDAISIPLVVNGDITCHASAVEALKRSGADAVMIGRGAQGRP 230