Pairwise Alignments

Query, 388 a.a., succinyl-CoA synthase, beta subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 709 a.a., succinyl-CoA synthetase, alpha/beta subunit (sucCD) (Chris Hemme) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  208 bits (530), Expect = 3e-58
 Identities = 137/383 (35%), Positives = 197/383 (51%), Gaps = 17/383 (4%)

Query: 1   MNLHEYQAKSLFAEYGLPVSEGFACDTAQEAVEAAGRIGGNLWVVKCQVHAGGRGKAGGV 60
           M L+E+Q+K LF E G+   +G   D+A   +E         W VK QV AGGRGKAGGV
Sbjct: 19  MFLNEHQSKRLFEEAGIETPQGIMTDSA--GIEGCLPPFDAPWFVKAQVLAGGRGKAGGV 76

Query: 61  KVTGDKEEIRAFAEYWLGKNLVTYQTDEKGQPVAKILVESCTDIANELYLGAVVDRATRR 120
           +   D   +R  A+  LG  +        G  V  + +E  T IA E Y+  +V R  R 
Sbjct: 77  RRADDLAGLRDVAKDILGMRI-------GGHAVPFVRIEPATAIARECYVSFMVSRKRRE 129

Query: 121 VVFMASTEGGVEIEKVAEETPELIHKAIIDPLTGPQPFQA-RDLGFKLGLNPTQMKQFTK 179
           ++F AS  GGVE+E         +      PLTG  P    R   F +G+       F +
Sbjct: 130 LLFTASGSGGVEVESGQGALVCAV------PLTGEMPEHVIRSAFFCIGVGREHWAGFRE 183

Query: 180 IFMGLATMFVDHDFALLEINPLVITTEGNLHCLDGKIGIDGNALFRQPKIKAMHDPSQDD 239
             + L     D+   L E+NPLV+T +G    LDGK+ +D N +  +P +   H P    
Sbjct: 184 FVLRLHGAVRDYGLLLAEVNPLVLTGDGRWLALDGKVEVDDNVVDIRPDLLRFHTPEHLA 243

Query: 240 AREAHAAMFELNYVALDGNVGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVA 299
             E  A    L+YV L G VG +VNGAGLAM TMD++N  G   ANF+D+GG A   R+ 
Sbjct: 244 PEENAAREAGLSYVELKGWVGLLVNGAGLAMATMDLLNFSGLAAANFMDLGGAADVPRMR 303

Query: 300 EAFKIILSDSNVKAVLVNIFGGIVRCDMIAEGIIGAVKEVGVKVPVVVRLEGTNAELGRE 359
            A +++  +  V+ V VN+FGGIV C  +A  ++ A+ +     PVVVR++G  A  GR+
Sbjct: 304 RALELLFGNPQVRVVCVNLFGGIVSCAAVAGALVEALGDGRAAKPVVVRMDGFEAAEGRQ 363

Query: 360 VL-AKSGLDIIAANSLTDAAELV 381
           +L  ++  D+  A  +  A +L+
Sbjct: 364 LLERRAHPDVHVARDIDHALDLL 386