Pairwise Alignments

Query, 1091 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

 Score =  434 bits (1116), Expect = e-125
 Identities = 291/1078 (26%), Positives = 543/1078 (50%), Gaps = 86/1078 (7%)

Query: 1    MSIISTSVKRPVTVWMFMLAIMLFGMVGFSRLAVKLLPDLSYPTLTIRTMYDGAAPVEVE 60
            M +   SVKRPV   +  + + +FG+V F++LAV+ +PD+  P +++ T Y GA+   +E
Sbjct: 1    MWLSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIE 60

Query: 61   QLVSKPIEEAVGVVKGLRKISSISRSGMSDVVLEFEWGTTMDMASLDVREKLDTI--ALP 118
              ++  +E+ +  + G+ +I+S+SR+GMS + + FE G  ++    D+R+ +     +LP
Sbjct: 61   SQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLP 120

Query: 119  LDVKKPLLLRFNPNLDPIMRLALSVPNASEAELKQMRTYAEEELKRRLEALSGVAAVRLS 178
             +   P + + N +    + + LS   +SE +  Q+  Y E  L  R   +SGV++V +S
Sbjct: 121  EEADDPQVFKNNGSGQASVYINLS---SSEMDRTQLTDYIERVLLDRFSLISGVSSVDVS 177

Query: 179  GGLEQEVHIQLNQEKLSQLNLNADDIKRRINEENINLSAGKVIQGDREYLVRTLNQFNSL 238
            GGL + +++++  E ++   +   DI   +N+EN+    G+V        VRT   + S 
Sbjct: 178  GGLYKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVRTARGYQSA 237

Query: 239  DELGQVIVYRDAQ-TLVRLFEVATITDAYKERSDITRIGSQESIELAIYKEGDANTVAVA 297
            ++   ++V R +  T + L +VA +    +  +   +     ++ + I  + DAN + VA
Sbjct: 238  EDFEYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVA 297

Query: 298  KKLRDELVKINKD-PQQNKLEVIYDQSEFIESAVSEVTSSALMGSVLAMLVIYLFLRNII 356
            K++ +E+ K+ +  P+  +L + YD + FIE ++SEV S+  +   L +LV+Y+F+  + 
Sbjct: 298  KRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFIGQLR 357

Query: 357  PTLIISISIPFSVIATFNMMYFADISLNIMSLGGIALAIGLLVDNAIVVLENIDRCRSEG 416
             TLI ++++P S+I+ F   Y+   S+N+++L  + L+IGL+VD+AIVV+ENI      G
Sbjct: 358  ATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERG 417

Query: 417  MSKLDAAVTGTKEVAGAIFASTMTTLAVFVPLVFVDGIAGALFSDQALTVTFALLASLLV 476
               L AA  GT+EV  A+ A+T+  + VF+P+ F+DG+ G LF++ ++ +  A++ S L+
Sbjct: 418  EKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLI 477

Query: 477  ALTSIPMLASREGFKILPELMKKTPKEKPTTKLGKLKHYSATVFSFPIVLLFNYLPSALL 536
            ALT  P+L    G K+L          K   K G+                FN L     
Sbjct: 478  ALTLTPVL----GSKLL----------KANVKPGR----------------FNQL----- 502

Query: 537  TFVLIIGRFFSWLLGLIMRPLSSGFNFVYHSTESIYHKLLAIALRKQLATLLLTTGITGA 596
                 I R F+ L                   ES Y ++++ A+R + A  ++     G 
Sbjct: 503  -----IDRLFARL-------------------ESGYRQVVSRAIRWRWAAPVVIAACIGG 538

Query: 597  CISLLPRLGMELIPPMNQGEFYVEILLPPGTA---VGETDRILQQLALSIKDRPEVKHAY 653
               L+  +  +L P  ++G  +  +     T+   +     +++Q  + +  +  +K   
Sbjct: 539  SYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQRLMPLLGQGFLKSFS 598

Query: 654  SQAGSGGLMTSDTARGGENWGRLQVELVDHSAYHQVTQVLRDTARRIPALEAKIEQPELF 713
             Q+ + G         G+  G + + L D   ++  T   ++   ++    A I    +F
Sbjct: 599  IQSPAFG------GNAGDQTGFVIMILED---WNDRTVTAQEALSQVRKALAGIPDVRVF 649

Query: 714  SF--------KTPLEIELTGYDLALLKRSADSLVNALSASDRFADINTSLRDGQPELSIR 765
             F          P++  L G D + LK  A+ L      S      +    +  PEL + 
Sbjct: 650  PFMPGFRGGSNEPVQFVLGGSDYSELKTWAEKLEEEAEKSPFMTGADIDYSEKTPELVVT 709

Query: 766  FDHARLAALGMDAPTVANRIAQRVGGTVASQYTVRDRKIDILVRSQLDERDQISDIDTLI 825
             D  R A LG+   ++++ +   +GG   + +  R  + D+ +R   +  +  +D+  + 
Sbjct: 710  IDKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENSFNNAADLSQIY 769

Query: 826  INPDSSQPIALSAVAEVSLQLGPSAINRISQQRVALVSANLAYGDLSDAVADAQQILAAQ 885
            +   + + + L  V  +        +   ++Q+   ++ANL  G       D     A +
Sbjct: 770  MRTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTLGQALDFLDQKAQE 829

Query: 886  VLPTSVQARFGGQNEEMEHSFQSLKIALILAVFLVYLVMASQFESLLHPLLILVAVPMAL 945
            +LP  +   + G++++ + +  S+ I   LA+ + YLV+A+QFES ++PL++++ VPM +
Sbjct: 830  ILPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFINPLVVMLTVPMGV 889

Query: 946  AGSVLGLYITQTHLSVVVFIGLIMLAGIVVNNAIVLVDRINQLRSEGVEKLEAIRVAAKS 1005
             G  LGL++    +++   IG+IML G+V  N I++V+  NQLR  GVE  +AI  A+  
Sbjct: 890  FGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDRGVEFEKAIIDASAR 949

Query: 1006 RLRPIMMTTLTTVLGLLPMALGLGDGAEVRAPMAITVIFGLSLSTLLTLIVIPVLYAM 1063
            RLRPI+MT  TT+ G +P+ +  G G E R  +   + FG+  +TL+TL+VIP +Y +
Sbjct: 950  RLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVTLLVIPAMYRL 1007