Pairwise Alignments

Query, 1091 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1079 a.a., efflux RND transporter permease subunit from Rhodanobacter denitrificans MT42

 Score =  389 bits (998), Expect = e-112
 Identities = 292/1117 (26%), Positives = 520/1117 (46%), Gaps = 112/1117 (10%)

Query: 1    MSIISTSVKRPVTVWMFMLAIMLFGMVGFSRLAVKLLPDLSYPTLTIRTMYDGAAPVEVE 60
            M   +  ++RP+   + M+A++L G++G+ +L V  LP++  P+L + T Y GA+   + 
Sbjct: 1    MGFSTLFIRRPIATSLLMVAVLLLGILGYRQLPVSALPEIEAPSLVVSTQYPGASASTMA 60

Query: 61   QLVSKPIEEAVGVVKGLRKISSISRSGMSDVVLEFEWGTTMDMASLDVREKLDTI--ALP 118
             L++ P+E  +G + GL  +SS S +G+S ++L+F     +D+A+ DV+  ++     LP
Sbjct: 61   ALITTPLERNLGQISGLTMMSSDSSAGLSTIILQFSMDRDIDIAAQDVQAAINQAKGTLP 120

Query: 119  LDVK-KPLLLRFNPNLDPIMRLALSVPNASEAELKQMRTYAEEELKRRLEALSGVAAVRL 177
             ++   P+  R NP   PI+ L L+   +   +L+++   A+  + ++L  + GV  V +
Sbjct: 121  GNLPYPPVYNRVNPADAPILTLKLT---SDSRQLREVNDLADSIIAQKLSQVQGVGLVSI 177

Query: 178  SGGLEQEVHIQLNQEKLSQLNLNADDIKRRINEENINLSAGKVIQGDREYLVRTLNQFNS 237
            +G +   V +Q+N  +LS L L  +D++  + + N+N   G +    + Y + T +Q + 
Sbjct: 178  AGNVRPAVRVQVNPAQLSNLGLTMEDVRSALTQANVNAPKGTLNGKTQSYSIGTNDQLSD 237

Query: 238  LDELGQVIVYRDAQTLVRLFEVATITDAYKERSDITRIGSQESIELAIYKEGDANTVAVA 297
              E    I+     + VRL +VA + D  +          Q ++ L + ++  AN V   
Sbjct: 238  AAEYKNTIISYKNNSPVRLSDVANVVDGVENDQLAAWANGQPAVLLDVRRQPGANIVQTV 297

Query: 298  KKLRDELVKINKD-PQQNKLEVIYDQSEFIESAVSEVTSSALMGSVLAMLVIYLFLRNII 356
            +++R  L ++    P    L+V  D++  I ++V +V  + ++   L + VI++FLR + 
Sbjct: 298  EQIRRVLPELRAALPADVHLDVFADRTVTIRASVHDVEFTLILTVFLVIGVIFVFLRRLW 357

Query: 357  PTLIISISIPFSVIATFNMMYFADISLNIMSLGGIALAIGLLVDNAIVVLENIDRCRSEG 416
             T+I S+++P S++ TF +M F  +SL+ +SL  + +A G +VD+AIV++ENI R   +G
Sbjct: 358  ATIIPSVAVPLSLMGTFGVMAFTGMSLDNLSLMALTVATGFVVDDAIVMIENIVRYIEQG 417

Query: 417  MSKLDAAVTGTKEVAGAIFASTMTTLAVFVPLVFVDGIAGALFSDQALTVTFALLASLLV 476
                +AA  G KE+   + + T++ +AVF+PL+ + G+ G LF + A  +T A+  S+LV
Sbjct: 418  KDGKEAAEVGAKEIGFTVLSLTVSLVAVFLPLLLMPGVTGRLFHEFAWVLTIAVTISMLV 477

Query: 477  ALTSIPMLASREGFKILPELMKKTPKEKPTTKLGKLKHYSATVFSFPIVLLFNYLPSALL 536
            +LT  PM+ +         L+K  P + P       +H +A                   
Sbjct: 478  SLTLTPMMCA--------YLLK--PDQLPEGDDAHERHAAA------------------- 508

Query: 537  TFVLIIGRFFSWLLGLIMRPLSSGFNFVYHSTESIYHKLLAIALRKQLATLLLTTGITGA 596
                                   G   V+  T  IY   L   L  Q  T+L+       
Sbjct: 509  -----------------------GKRTVWSRTVGIYENSLDWVLDHQRLTMLVAGAAVVL 545

Query: 597  CISLLPRLGMELIPPMNQGEFYVEILLPPGTAVGETDRILQQLALSIKDRPEVKHAYSQA 656
             + L   +   L+P  + G     +      A  + +   + +A +++  P V      A
Sbjct: 546  TVFLYIVIPKGLLPEQDTGLITGVVQADDNIAFPQMEDRTKAVAEALRKDPAV------A 599

Query: 657  GSGGLMTSDTARGGENWGRLQVELV---DHSAYHQVTQVLRDTARRIPALEAKIEQPELF 713
            G    + + T     N G+L + L    D +    +   L+     IP +   ++  +  
Sbjct: 600  GVAAFIGAGTINPTLNQGQLSIVLKDRGDRAGLDALLPRLQHAVAGIPGVALYLKPVQDV 659

Query: 714  SFKTPLEIELTGYDLALLKRS-----ADSLVNALSASDRFADINTSLRDGQPELSIRFDH 768
            +  + +      Y L+ +K S     A  +  A+      AD++ +L D    L +  D 
Sbjct: 660  TLDSRVAATEYQYSLSAVKSSELAGYASQMTQAMRQRPELADVDNNLADNGNALKLTIDR 719

Query: 769  ARLAALGMDAPTVANRI----AQRVGGTVASQ-----------------------YTVRD 801
             + + LG+   T+ + +     QR   T+ +Q                        TVR 
Sbjct: 720  EKASRLGVPVQTIDDTLYDAFGQRQISTIFTQLNQYRVVLEVAPEFRSSDDLLTKLTVRG 779

Query: 802  RKIDILVRSQLDERDQ-----------ISDIDTLIINPDSSQPIALSAVAEVSLQLGPSA 850
                 L  S      Q           I +   +     +   I LS++    +   P  
Sbjct: 780  NGNGALTGSNATSFGQLKSSNSATPSGIGNTGNIGFEIGAGGSIPLSSLVSAQVTSAPLV 839

Query: 851  INRISQQRVALVSANLAYG-DLSDAVADAQQILAAQVLPTSVQARFGGQNEEMEHSFQSL 909
            ++   Q     ++ N+A G  LSDAVA   Q+ A    P  ++  F G+  E   S    
Sbjct: 840  VSHQQQLPAVTLAFNVAPGYSLSDAVAAIHQVEAQLNFPPQIRGEFVGKAAEFTSSLGDE 899

Query: 910  KIALILAVFLVYLVMASQFESLLHPLLILVAVPMALAGSVLGLYITQTHLSVVVFIGLIM 969
             + L+ A+ ++Y+V+   +ES +HPL I+  +P A  G++L L +    LSV   +G+++
Sbjct: 900  VLLLLAAIVVIYIVLGVLYESYIHPLTIISTLPPAGVGALLALILCGMSLSVDGIVGIVL 959

Query: 970  LAGIVVNNAIVLVDRINQLRSEGVEKLEAIRVAAKSRLRPIMMTTLTTVLGLLPMALGLG 1029
            L GIV  NAI+++D   + R  G+   EAIR A   R RPIMMTT   +LG LP+ALG G
Sbjct: 960  LIGIVKKNAIMMIDFAIEARRTGLNAREAIRRACLLRFRPIMMTTAAAMLGALPLALGNG 1019

Query: 1030 DGAEVRAPMAITVIFGLSLSTLLTLIVIPVLYAMFDR 1066
             GAE+R P+ ++++ GL LS L+TL   PV+Y   +R
Sbjct: 1020 IGAELRRPLGVSIVGGLLLSQLVTLYTTPVIYLYMER 1056