Pairwise Alignments

Query, 1091 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1066 a.a., MMPL family transporter from Rahnella sp. WP5

 Score =  398 bits (1023), Expect = e-114
 Identities = 296/1110 (26%), Positives = 524/1110 (47%), Gaps = 119/1110 (10%)

Query: 8    VKRPVTVWMFMLAIMLFGMVGFSRLAVKLLPDLSYPTLTIRTMYDGAAPVEVEQLVSKPI 67
            + RPV   + M+A++L G+  ++ L+   LP + YPT+ + T+Y GA+P  +   ++ P+
Sbjct: 8    ILRPVATILLMVAVLLSGIFAYNMLSTSALPQVDYPTIQVTTLYPGASPDVMASGITAPL 67

Query: 68   EEAVGVVKGLRKISSISRSGMSDVVLEFEWGTTMDMASLDVREKLDTI--ALPLDVKKPL 125
            E  +G + GL ++ S S SG S + L+F    ++D+A  +V+  ++     LP D+  P 
Sbjct: 68   ERQLGQMAGLSQMYSTSASGSSIITLKFSLDLSLDVAEQEVQAAINAADSLLPSDLPNPP 127

Query: 126  LLRFNPNLDPIMRLALSVPNASEA-ELKQMRTYAEEELKRRLEALSGVAAVRLSGGLEQE 184
              +    ++P     L++   SE+  L +++      +  +L  +SGV  V L+GG +  
Sbjct: 128  TYK---KVNPADAAVLTLAATSESLPLTKVQDLVNTRVALKLSQISGVGMVTLAGGHQPA 184

Query: 185  VHIQLNQEKLSQLNLNADDIKRRINEENINLSAGKVIQGDREYLVRTLNQFNSLDELGQV 244
            + +Q++  KL+  NL+ + I   I   N+N S G          +   +Q  +  E G +
Sbjct: 185  IRVQVDPRKLAAHNLSMETINTLIGNSNVNGSKGGFDGPHHSITIDANDQLRTAAEYGNL 244

Query: 245  IVYRDAQTLVRLFEVATITDAYKERSDITRIGSQESIELAIYKEGDANTVAVAKKLRDEL 304
            IV  +    +RL +VAT+++A + +        Q +I +++ ++  AN + V   ++ +L
Sbjct: 245  IVNYENGAALRLRDVATLSEAAENQYLSAWANKQPAIIISVQRQPGANVIQVVDAIKAQL 304

Query: 305  VKINKD-PQQNKLEVIYDQSEFIESAVSEVTSSALMGSVLAMLVIYLFLRNIIPTLIISI 363
             K+ +  P+  K+ VI D+++ I +++S+V    L+   L ++V +LFLRN+  TLI S+
Sbjct: 305  PKLQEALPESVKISVISDRTQTIRASISDVQFELLLSIALVVMVTFLFLRNVAATLIPSV 364

Query: 364  SIPFSVIATFNMMYFADISLNIMSLGGIALAIGLLVDNAIVVLENIDRCRSEGMSKLDAA 423
            ++P S++ TF +MY    SLN +SL  + +A G ++D+AIVV+ENI R   EG + + AA
Sbjct: 365  AVPLSLVGTFGVMYLCGFSLNNLSLMALTIATGFVIDDAIVVVENISRRLEEGETPMQAA 424

Query: 424  VTGTKEVAGAIFASTMTTLAVFVPLVFVDGIAGALFSDQALTVTFALLASLLVALTSIPM 483
            + G++++   I + T + +AV +PL+F+  + G LF + A+T+  ++L S++V+LT  PM
Sbjct: 425  LKGSQQIGFTIISLTFSLIAVLIPLLFMGDVVGRLFREFAITLAVSILVSMVVSLTLTPM 484

Query: 484  LASREGFKILPELMKKTPKEKPTTKLGKLKHYSATVFSFPIVLLFNYLPSALLTFVLIIG 543
            L +         L++ TP+EK +      K Y                           G
Sbjct: 485  LCA--------YLLRHTPEEKQS------KFYRKG------------------------G 506

Query: 544  RFFSWLLGLIMRPLSSGFNFVYHSTESIYHKLLAIALRKQLATLLLTTGITGACISLLPR 603
             FF  ++                   + Y ++L + L  Q  TLL+          L   
Sbjct: 507  EFFDKMI-------------------AGYDRMLIVVLNHQKLTLLVAAATLVFTALLYVI 547

Query: 604  LGMELIPPMNQGEFYVEILLPPGTAVGETDRILQQLALSIKDRPEVKHAYSQAGSGGLMT 663
            +     P  + G            +  E  R  Q L  +I + P+V+   S  G  G  T
Sbjct: 548  VPKGFFPSQDTGMIQGITQASQDVSFSEMGRRQQLLTAAILNDPDVESVSSTIGVDGNNT 607

Query: 664  SDTARGGENWGRLQVELVDHSAYHQ----VTQVLRDTARRIPALEAKIEQPELFSFK--- 716
            S       N GRLQ+ L       +    + + L+     +P +E  ++  +  +     
Sbjct: 608  S------LNSGRLQISLKSFDERSERAPAIIERLKQETAGVPGIELYMQASQDLTVDDQV 661

Query: 717  TPLEIELT--GYDLALLKRSADSLVNALSASDRFADINTSLRDGQPELSIRFDHARLAAL 774
            TP + + T    D   L +    L+  LSA   F+++ ++L++      +  D    A  
Sbjct: 662  TPSQYQFTLDDADSENLVQWTPKLIEKLSALPEFSEVVSNLQNQGQIAYVELDRDAAARY 721

Query: 775  GMDAPTV----ANRIAQRVGGTVASQYTVRDRKIDILVRSQLDERDQISDIDTLIINPDS 830
            G+ A  V     N   QR+  T+ +Q      ++ + V  Q  +     D   L  N  +
Sbjct: 722  GITASDVDTALYNAFGQRLVSTIFTQ--ANQYRVVLEVAPQFQQSPASFDDVYLATNNST 779

Query: 831  SQP--------------------------------IALSAVAEVSLQLGPSAINRISQQR 858
            S                                  + L+++A++ ++ G     R++Q  
Sbjct: 780  STSGTVATTTSTTSSSTSDSGTSTTTTNAGATNGMVKLTSIAKIHMRTGALLQARLNQFP 839

Query: 859  VALVSANLAYG-DLSDAVADAQQILAAQVLPTSVQARFGGQNEEMEHSFQSLKIALILAV 917
               VS NL  G  L  A    +  +A   +P S+  R+ G     E +  +    ++ A+
Sbjct: 840  AVTVSFNLKDGYSLEQAQQAIKTTVADIAMPDSITLRYQGAAASFESATGNTLWLILAAL 899

Query: 918  FLVYLVMASQFESLLHPLLILVAVPMALAGSVLGLYITQTHLSVVVFIGLIMLAGIVVNN 977
              +Y+V+   +ES +HP+ IL  +P A  G++L L    T  S++  IG+I+L GIV  N
Sbjct: 900  LTMYVVLGILYESFIHPVTILSTLPSAAVGALLSLIFAGTEFSLIALIGVILLIGIVKKN 959

Query: 978  AIVLVD-RINQLRSEGVEKLEAIRVAAKSRLRPIMMTTLTTVLGLLPMALGLGDGAEVRA 1036
            AI+++D  ++    +G+   EAI  A   R RPIMMTT+  +LG LP+ L  G GAE+R 
Sbjct: 960  AIMMIDFALDAENKQGLSPREAIHQACLLRFRPIMMTTMAALLGALPLMLASGSGAELRQ 1019

Query: 1037 PMAITVIFGLSLSTLLTLIVIPVLYAMFDR 1066
            P+ + ++ GL  S +LTL   PV+Y MFDR
Sbjct: 1020 PLGLVIVGGLIFSQVLTLFSTPVIYLMFDR 1049