Pairwise Alignments

Query, 1091 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1018 a.a., efflux RND transporter permease subunit from Parabacteroides merdae CL09T00C40

 Score =  428 bits (1100), Expect = e-123
 Identities = 282/1082 (26%), Positives = 534/1082 (49%), Gaps = 84/1082 (7%)

Query: 2    SIISTSVKRPVTVWMFMLAIMLFGMVGFSRLAVKLLPDLSYPTLTIRTMYDGAAPVEVEQ 61
            +I   S+KRPV   +  + ++LFGM+G+  L V+  P +  P +++   Y GA    +  
Sbjct: 3    NISEISIKRPVLSTVMTIILLLFGMIGYKFLGVREFPSVDNPIISVNVTYPGANAEVIMN 62

Query: 62   LVSKPIEEAVGVVKGLRKISSISRSGMSDVVLEFEWGTTMDMASLDVREKLDTIA--LPL 119
             +++P+E+ +  + G+R +SS+S  G   + +EFE    ++ A+ DVR+K+      LP 
Sbjct: 63   QITEPLEQNINGIPGIRSLSSVSSQGSCRITVEFELSVDLETAANDVRDKVSRAQRYLPR 122

Query: 120  DVKKPLLLRFNPNLDPIMRLALSVPNASEAELKQMRTYAEEELKRRLEALSGVAAVRLSG 179
            D   P + + + +  PIM++ +    +S+  L ++   AE  +K RL+ +  V+ V + G
Sbjct: 123  DCDPPTVSKADADATPIMQIGI---RSSKRSLMELSEIAELTVKERLQTIPNVSGVDIWG 179

Query: 180  GLEQEVHIQLNQEKLSQLNLNADDIKRRINEENINLSAGKVIQGDREYLVRTLNQFNSLD 239
                 + + L+  K++   +   D+K  ++ EN+ L +G +     +  +RTL   ++  
Sbjct: 180  QKRYSMRLWLDPIKMAGYGITPLDVKNAVDAENVELPSGSIEGNTIDLSIRTLGLMHTAT 239

Query: 240  ELGQVIVYRDAQTLVRLFEVATITDAYKERSDITRIGSQESIELAIYKEGDANTVAVAKK 299
            E   +I+ RD   ++R  +V     + ++   + R   +  +   I  +  AN + +A +
Sbjct: 240  EFNDLIIKRDGDNIIRFQDVGRAEVSPEDLRSVMRKNGEPMVIDVIIPQPGANQIEIADE 299

Query: 300  LRDELVKINKD-PQQNKLEVIYDQSEFIESAVSEVTSSALMGSVLAMLVIYLFLRNIIPT 358
                + ++ KD P+   +E++YD + FI ++++EV  +  +  +L +L+I+LFLR+   T
Sbjct: 300  AYKRIEQLKKDLPEDVTVEMVYDNTRFIRASIAEVEETIYVAFLLVVLIIFLFLRDWRVT 359

Query: 359  LIISISIPFSVIATFNMMYFADISLNIMSLGGIALAIGLLVDNAIVVLENIDRCRSEGMS 418
            L+  + IP S++  F +MY +  S+N++++  + L++GL+VD+AIV+ ENI     +GM 
Sbjct: 360  LVPVVVIPVSLVGAFFVMYVSGFSINVLTMLAVVLSVGLVVDDAIVMAENIYVRIEQGME 419

Query: 419  KLDAAVTGTKEVAGAIFASTMTTLAVFVPLVFVDGIAGALFSDQALTVTFALLASLLVAL 478
              +A + G KE+  A+ ++T+T ++VF+P+VF++G+ G LF + ++ +  ++  S  VAL
Sbjct: 420  PKEAGIDGAKEIFFAVVSTTVTLVSVFLPIVFMEGMTGRLFKEFSIVIAGSVTISSFVAL 479

Query: 479  TSIPMLASREGFKILPELMKKTPKEKPTTKLGKLKHYSATVFSFPIVLLFNYLPSALLTF 538
            T  PMLA++        L K+  K    TK          +++  +    N+   ++   
Sbjct: 480  TFTPMLATK-------LLRKRENKGWLYTKTEPFFEGMNNIYAKSLNAFLNHKWWSIPIV 532

Query: 539  VLIIGRFFSWLLGLIMRPLSSGFNFVYHSTESIYHKLLAIALRKQL-ATLLLTTGITGAC 597
            V++ G      +G   R + S  + +   +       ++I +R Q  AT       T   
Sbjct: 533  VILFGS-----IGYFWRTIRSELSPLEDRSS------ISINIRAQEGATFEFIRDFTDQV 581

Query: 598  ISLLPRLGME---LIPPMNQGEFYVEILLPPGTAVGETDRILQQLALSIKDRPEVKHAYS 654
             ++   L  E   L    N    Y+ +LLP                  IKDR        
Sbjct: 582  AAMADTLAPERQALTVRANNSNGYITVLLP-----------------DIKDRE------- 617

Query: 655  QAGSGGLMTSDTARGGENWGRLQVELVDHSAYHQVTQVLRDTARRIPALEAKIEQPELFS 714
                                R Q+E+ D         VL    R      A ++Q   F 
Sbjct: 618  --------------------RSQMEIAD---------VLSKNVRGKTEARAFVQQQSTFG 648

Query: 715  FK---TPLEIELTGYDLALLKRSADSLVNALSASDRFADINTSLRDGQPELSIRFDHARL 771
             +    P++  L    L  L+    + +  +S S  F   + +L+  +PE  I  +  + 
Sbjct: 649  GRRAGMPVQYVLQATSLEKLQEYLPAFMQKVSESPVFQMADVNLKFTKPEARIEINRDKA 708

Query: 772  AALGMDAPTVANRIAQRVGGTVASQYTVRDRKIDILVRSQLDERDQISDIDTLIINPDSS 831
            ++LG+   T+A  +   + G     + +  ++  IL      +R+   D+ ++ +  D+ 
Sbjct: 709  SSLGVSTRTIAQTLQYALSGQRMGYFYMNGKQYQILGEINRQQRNTPLDLKSIYVRSDAG 768

Query: 832  QPIALSAVAEVSLQLGPSAINRISQQRVALVSANLAYGDLSDAVADAQQILAAQVLPTSV 891
            + I L  +  +   + P  + R ++   A VS+ L  G       D    +A++ L  S 
Sbjct: 769  EMIQLDNLVTLKEDVAPPQLYRYNRFVSATVSSGLNKGYTIGDGLDEMDRIASETLDNSF 828

Query: 892  QARFGGQNEEMEHSFQSLKIALILAVFLVYLVMASQFESLLHPLLILVAVPMALAGSVLG 951
            +    G+++E   S  SL  A+ILA+F++YLV+A+QFES   PL+++  VP+A+AG+++ 
Sbjct: 829  RTALSGESKEFRESSSSLMFAMILALFMIYLVLAAQFESFKDPLVVMFTVPLAIAGALIF 888

Query: 952  LYITQTHLSVVVFIGLIMLAGIVVNNAIVLVDRINQLRSEGVEKLEAIRVAAKSRLRPIM 1011
            +  +   +++   IG+IML G+V  N I++V+  NQ +  G+   EAIR A+  RLRPI+
Sbjct: 889  MSYSDITMNIFSQIGIIMLIGLVAKNGILIVEFANQRQEAGLSMAEAIRSASTQRLRPIL 948

Query: 1012 MTTLTTVLGLLPMALGLGDGAEVRAPMAITVIFGLSLSTLLTLIVIPVLYAMFDRKKFDH 1071
            MT+++T+LGL+P+    G+GA+ R  M I V+ G+ +ST LTL ++P +Y+     +   
Sbjct: 949  MTSISTILGLVPLVYASGEGAQGRIAMGIAVVGGMIVSTFLTLFIVPAMYSFISTDRQSK 1008

Query: 1072 TN 1073
             N
Sbjct: 1009 IN 1010