Pairwise Alignments

Query, 501 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 458 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

 Score = 76.6 bits (187), Expect = 2e-18
 Identities = 80/317 (25%), Positives = 139/317 (43%), Gaps = 11/317 (3%)

Query: 34  LLDIFFLSLLGEHELAAAVGYAGSISFFTTLIGIGLSIALGALVSRSIGAKDVELAKRLL 93
           L+D+  L  LGE E+AA VG A   +F TT++ +G++     L ++  GA D +  +   
Sbjct: 38  LVDVLMLGQLGEAEIAA-VGVAARATFVTTIMLVGVTTGGALLTAQYWGAGDRKGVREST 96

Query: 94  LNSAVVTTLISVFVSIVVTTFIPELVTLVGASGHTAELAESYLYILVPSLPFICLAMALG 153
             + +V+   + F  ++   F  ++++L   S     L   YL I   ++  +    ++ 
Sbjct: 97  ALTWLVSNFFAFFTVLLFLFFPQQIMSLTTDSEQVNALGSQYLIITSFTMFAVACVSSMA 156

Query: 154 GALRSVGDAKLSMMSTLAGGGVNAVLDPIFIF----LFAMGIEGAALASVLARITVFVIA 209
             LR++    +S   +  G   N VL+ I IF      AMGI+GAA+A+VL+        
Sbjct: 157 VGLRAMHKPGVSTFFSGIGIVSNVVLNWILIFGKFGFPAMGIQGAAIATVLSGAIEIACL 216

Query: 210 GRGVMVKHQLLGKFNRSDFKA--DLKPIFAIAGPAILTNIATPIGNAFVTRAIADFGDAY 267
              +  K  L+  F   D KA  D   I      ++ T     I  A +    A  G   
Sbjct: 217 YSYLYGKKHLMA-FGWQDIKAVIDWPKISRFLRLSLPTTFNFLIWAAGLFTYHAIMGQTG 275

Query: 268 VAGWAVLGRLVPV---TFGMIFALSGAIGPIVGQNFGAGRFDRVRESLTKAIQFCTLYVV 324
           V G A L  + PV   +  ++  +S A   +VG   GA  ++ V            L  +
Sbjct: 276 VQGLAALSVMTPVESISLSLLIGMSTAAAVLVGNQLGAKNYEAVYYQAIGVTACSVLVGI 335

Query: 325 VMSLLLFLLKSQIVSLF 341
           V+++ L+L++  ++  F
Sbjct: 336 VVAIGLYLVQIPVLGAF 352



 Score = 45.8 bits (107), Expect = 3e-09
 Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 38/189 (20%)

Query: 17  VMSSTAAVGISALFVVDLLDIFFLSLLGEHELAAAVGYAGSISFFTTLIGIGLSIALGAL 76
           +M  T   G++AL V+  ++   LSLL                       IG+S A   L
Sbjct: 270 IMGQTGVQGLAALSVMTPVESISLSLL-----------------------IGMSTAAAVL 306

Query: 77  VSRSIGAKDVELAKRLLLNSAVVTTLISVFVSI-VVTTFIPELVTLVGASGHTAELAESY 135
           V   +GAK+ E      +     + L+ + V+I +    IP L      +  T EL+E +
Sbjct: 307 VGNQLGAKNYEAVYYQAIGVTACSVLVGIVVAIGLYLVQIPVLGAFTALTPETRELSEKF 366

Query: 136 LYILVPSLPFICLAM-ALGGALRSVGDAKLSMMSTLAGGGVNAVLDPIFIFLFAMGIEGA 194
           + IL   +      M A+ G LR             AGG V   L    +  + +GI  A
Sbjct: 367 MLILCLGIVLRSFPMTAIVGVLR-------------AGGDVKFCLGQDIVAQWCIGIPLA 413

Query: 195 ALASVLARI 203
           A A+++ ++
Sbjct: 414 AFAALVLKV 422