Pairwise Alignments

Query, 501 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 454 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

 Score = 73.9 bits (180), Expect = 1e-17
 Identities = 83/363 (22%), Positives = 157/363 (43%), Gaps = 17/363 (4%)

Query: 32  VDLLDIFFLSLLGEHELAAAVGYAGSISFFTTLIGIG------LSIALGALVSRSIGAKD 85
           V LL +   +++G  E A    Y G ++  +T+I +       L ++   L +++ GA++
Sbjct: 34  VPLLGLVDAAVIGHLEHA---WYLGGVALGSTMISVTFWLLGFLRMSTTGLTAQAHGAQN 90

Query: 86  VELAKRLLLNSAVVTTLISVFVSIVVTTFIPELVTLVGASGHTAELAESYLYILVPSLPF 145
            +   R+LL  +V+   ++    +        +     AS      AE+Y YI   S P 
Sbjct: 91  SQQLARVLLQGSVIALGLAALFLLFHRPVAELIFHFSDASSEVKTYAEAYFYIRAWSAPA 150

Query: 146 ICLAMALGGALRSVGDAKLSMMSTLAGGGVNAVLDPIFIFLFAMGIEGAALASVLA---- 201
             L   L G L    +A+  M   +     N VLD + +    + +EGAA+ASV+A    
Sbjct: 151 ALLNFVLLGWLLGTQNARAPMWMVIITNLTNIVLDLLLVLGLGLKVEGAAIASVIADYAG 210

Query: 202 RITVFVIAGRGVMVKHQLLGKFN-RSDFKADLKPIFAIAGPAILTNIATPIGNAFVTRAI 260
            +   +  GR    +HQL   F+       +L  + A+     L ++      +F+T   
Sbjct: 211 LLFGLLCVGR-YWRQHQLPAPFSFIPSLTKELSRLVALNRDIFLRSLCLQAVFSFMTFQG 269

Query: 261 ADFGDAYVAGWAVL-GRLVPVTFGMIFALSGAIGPIVGQNFGAGRFDRVRESLTKAIQFC 319
           A  GD  VA  AVL   L+ +++GM    + A+  +VG+  GA    ++R ++  +  + 
Sbjct: 270 AALGDDIVAANAVLMSFLMMISYGM-DGFAYAMEAMVGKAIGAKDDRQLRTAMISSTFWA 328

Query: 320 TLYVVVMSLLLFLLKSQIVSLFDMKGDSAALIEFFCSYIAVFFIFSGILFVANASFNNLG 379
           T+  +++SL+     S ++ +        A  E +  ++    + +   F+ +  F    
Sbjct: 329 TMICLLLSLIFLGFGSDLIQMITNIPSVQATAEHYLPWLVAMPLIAVWCFLLDGVFIGAT 388

Query: 380 KAK 382
           K K
Sbjct: 389 KGK 391



 Score = 31.2 bits (69), Expect = 8e-05
 Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 7/132 (5%)

Query: 233 KPIFAIAGPAILTNIATPIGNAFVTRAIADFGDAYVAGWAVLG-RLVPVTFGMIFALSGA 291
           + + AIA P +L+NI  P+        I     A+  G   LG  ++ VTF ++  L  +
Sbjct: 18  RQVLAIALPMVLSNITVPLLGLVDAAVIGHLEHAWYLGGVALGSTMISVTFWLLGFLRMS 77

Query: 292 IGPIVGQNFGAGRFDRVRESLTKAIQFCTLYVVVMSLLLFLLKSQIVSLFDMKGDSAALI 351
              +  Q  GA    +  + L + +   ++  + ++ L  L    +  L     D+++ +
Sbjct: 78  TTGLTAQAHGA----QNSQQLARVLLQGSVIALGLAALFLLFHRPVAELIFHFSDASSEV 133

Query: 352 EFFCSYIAVFFI 363
           + +    A F+I
Sbjct: 134 KTYAE--AYFYI 143