Pairwise Alignments

Query, 501 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 444 a.a., putative multi antimicrobial extrusion protein from Phaeobacter inhibens DSM 17395

 Score =  182 bits (462), Expect = 2e-50
 Identities = 129/428 (30%), Positives = 208/428 (48%), Gaps = 9/428 (2%)

Query: 1   MTQAKFVEGSILRHILVMSSTAAVGISALFVVDLLDIFFLSLLGEHELAAAVGYAGSISF 60
           M Q    +G++ R +  +S+  ++GI  +  V L D +FL  LGE  LAA VG+   ++ 
Sbjct: 1   MAQKNLTQGAVWRALAAVSAPMSLGILGVLSVGLADAYFLGQLGEAPLAA-VGFIYPVTT 59

Query: 61  FTTLIGIGLSIALGALVSRSIGAKDVEL-AKRLLLNSAVVTTLISVFVSIVVTTFIPELV 119
             T + IGLS    A +S+S+G  D  +   RL +++ V+ TL++  V++V       L 
Sbjct: 60  AVTSLSIGLSAGANAAISQSLGRGDSAIETNRLSVHAIVLGTLVATLVALVFYLGAGALF 119

Query: 120 TLVGASGHTAELAESYLYILVPSLPFICLAMALGGALRSVGDAKLSMMSTLAGGGVNAVL 179
           +++GA       A+SY      S PF+     L    R+ GD   S +  +    +N  L
Sbjct: 120 SVMGAKDDVLAEAQSYAPFWALSFPFLVGMALLNAVFRAHGDGATSAVIMMVAAALNIAL 179

Query: 180 DPIFIFLFA----MGIEGAALASVLARITVFVIAGRGVMVKHQLLG--KFNRSDFKADLK 233
           DP+ I+       M   GAALA+ LAR+   +I   G  ++  ++   +         ++
Sbjct: 180 DPVLIYGLGPVPEMSTAGAALATALARVLT-LIGAFGYALRTGVIRPPEVFTDGIGGSVR 238

Query: 234 PIFAIAGPAILTNIATPIGNAFVTRAIADFGDAYVAGWAVLGRLVPVTFGMIFALSGAIG 293
            +  +  PA  +N   P G A VT A A  GD  VAG     R+  V    + ALS  IG
Sbjct: 239 EVIRVGLPAAFSNAINPAGMAMVTAAAATLGDTVVAGLGAAQRVQSVALVPLLALSAGIG 298

Query: 294 PIVGQNFGAGRFDRVRESLTKAIQFCTLYVVVMSLLLFLLKSQIVSLFDMKGDSAALIEF 353
           P+VGQN+GA +  R R ++ ++ QFC  Y + M+L+L L  S I  L      +AA    
Sbjct: 299 PVVGQNWGADQQMRARLAVWQSWQFCIGYGLAMALVLTLFASDIAGLLTSDQGAAATTAQ 358

Query: 354 FCSYIAVFFIFSGILFVANASFNNLGKAKYSTLFNVGKATLGTVPFVYVGAQLGGVYGVL 413
           +   ++  F+  G+L  ANA+ N   KA +S   ++ +     VP  ++G  + G  G+L
Sbjct: 359 YLRIVSWSFLGYGVLVTANAAMNARSKAVWSMGLSLMRIFAIYVPLAWLGVWIFGYAGIL 418

Query: 414 IGQVIGSI 421
              VI ++
Sbjct: 419 GAAVIANL 426