Pairwise Alignments

Query, 501 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 460 a.a., MATE family efflux transporter from Methanococcus maripaludis S2

 Score =  137 bits (344), Expect = 1e-36
 Identities = 108/439 (24%), Positives = 203/439 (46%), Gaps = 23/439 (5%)

Query: 9   GSILRHILVMSSTAAVGISALFVVDLLDIFFLSLLGEHELAAAVGYAGSISFFTTLIGIG 68
           G   + I+ +S    + +S   + +++D  +++ LG   LAA +G      F    I  G
Sbjct: 12  GDPKKAIVKISLPMVIAMSFQSLYNVIDAIWVAGLGSDALAA-IGLFFPFMFAIMAISNG 70

Query: 69  LSIALGALVSRSIGAKDVELAKRLLLNSAVVTTLISVFVSIVVTTFIPELVTLVGASGHT 128
           + I   + +SR IG  + + A  + ++S V+  +I + + I V  F+  + +L+GASG T
Sbjct: 71  VGIGGSSAISRRIGQNNKDAADNIAVHSIVLGIIIGILL-IGVIPFLGAIFSLIGASGIT 129

Query: 129 AELAESYLYILVPSLPFICLAMALGGALRSVGDAKLSMMSTLAGGGVNAVLDPIFIFLFA 188
             +A  Y  IL      +         LR  GD K +M + + G  +N VLDPIFI++  
Sbjct: 130 VTMAVEYSTILFGGAVVLLFTNIANAILRGEGDTKRAMYAIILGSVLNIVLDPIFIYVLN 189

Query: 189 MGIEGAALASVLARITVFVIAGRGVMVKHQLLGKFNRSDFKAD---LKPIFAIAGPAILT 245
           MG+ GAA A++L+ +   ++    + +K     K +   FK D   +K IF+I  PA ++
Sbjct: 190 MGVAGAAWATLLSLVITGILFVYWLFIKKDTFLKISFEKFKLDINIIKEIFSIGLPASIS 249

Query: 246 NIATPIGNAFVTRAIADFGD-----AYVAGWAVLGRLVPVTFGMIFALSGAIGPIVGQNF 300
           ++        +T  +A  G       +  GW    R+V +    +  L+  +  + G  +
Sbjct: 250 HLTMAFSMFLLTAIVAKAGGNDGIAVFSTGW----RIVSMGTIPLVGLATGVTVVTGAAY 305

Query: 301 GAGRFDRVRESLTKAIQFCTLYVVVMSLLLFLLKSQIVSLFDMKGDSAALIEFFCSYIAV 360
           G+   +++  S   A++   L   +++ L+ + ++QI  LF    +S  ++E    ++  
Sbjct: 306 GSANPEKLEISYKYALKMGILVETIIAALILIFENQITYLFTYSENSVHILEGLLVFLKY 365

Query: 361 FFIFSGIL---FVANASFNNLGKAKYSTLFNVGKATLGTVPFVYVGAQL--GGVYGVLIG 415
            F+F   L    +  A F  + K   S   ++ +  +  +P  Y    +   G+ GV  G
Sbjct: 366 MFLFYPTLPLGMLTAAMFQGVSKGNNSLFISLLRTIILQIPMAYTFGIIFNQGLTGVWFG 425

Query: 416 QVIGSILFGVVGVWVAYRL 434
            ++G     V+ V +AY L
Sbjct: 426 MILGH----VIAVSIAYLL 440