Pairwise Alignments

Query, 293 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 297 a.a., DNA-binding transcriptional regulator OxyR from Vibrio cholerae E7946 ATCC 55056

 Score =  100 bits (248), Expect = 5e-26
 Identities = 75/293 (25%), Positives = 135/293 (46%), Gaps = 8/293 (2%)

Query: 1   MDIRQLKHLDALAITGSFTAAAKKLNMAQPALSQSIKRLELSLGVTLINRTSNKHDKHLA 60
           M+IR  ++L ALA    F  AA+   ++QP LS  I++LE  +G TL+ R+S +    + 
Sbjct: 1   MNIRDFEYLVALADHKHFRKAAEACFVSQPTLSGQIRKLEDEIGTTLLERSSRR----VL 56

Query: 61  LTAEGLVLHQHATLILKQIKQAEAQIRAMANLTSGEVRIAVPGMLGSFYLPSRLMAFRHQ 120
            T  GL L   A  IL ++K  +          +G + I     LG + LP  +   + +
Sbjct: 57  FTEAGLQLVDQAKKILSEVKTFKDMANQQTGAMTGPLHIGFIPTLGPYLLPKIIPTLKER 116

Query: 121 YPELKLSLFEGGTRDALRMLQQEEVDIAIITAQDLQPDFDSQLLIREQMVIAMGAEHPLA 180
           +PEL+L L E  T   +R L++ ++D  ++ + +    F    L  E + IA+  +H  A
Sbjct: 117 FPELELYLHEAQTNQLVRQLEEGKLDCLVLASVEETAPFKEIELYNEVLSIAVPCDHAWA 176

Query: 181 ELPAVSLNDFFDHELVMFKTGYFHREWILSQAKDLGKKPNIAFETNLINLIKQIVSQGFG 240
               V + +     ++    G+  R+  L      G K +  F+   +  ++ +V+ G G
Sbjct: 177 ARDEVDMLELKGKTVLALGDGHCLRDQALGFCFAAGAKDDERFKATSLETLRNMVAAGAG 236

Query: 241 ITSVLEMAI---SPKDDI-LAKPFDPPVFLNLHIAWKKQRPVSQADRAFVEFL 289
           IT + E+A+     KD +   +  +P     L +A++   P+ Q      E +
Sbjct: 237 ITLLPELALPEDKTKDGVCYLRAVNPIPSRRLVLAYRPGSPLRQRFEQLAEVI 289