Pairwise Alignments

Query, 293 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 292 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score = 96.3 bits (238), Expect = 7e-25
 Identities = 73/292 (25%), Positives = 144/292 (49%), Gaps = 14/292 (4%)

Query: 1   MDIRQLKHLDALAITGSFTAAAKKLNMAQPALSQSIKRLELSLGVTLINRTSNKHDKHLA 60
           MDIR L++   L    SFT A+++L + QP +S+ I+ LE  L   L++R      +   
Sbjct: 1   MDIRALRYFVELVNQQSFTKASERLFVTQPTISKMIRNLEQELEQPLLHR----EGRRFW 56

Query: 61  LTAEGLVLHQHATLILKQIKQAEAQIRAMANLTSGEVRIAVPGMLGSFYLPSRLM-AFRH 119
           LT  G +++Q A  IL Q++Q +A++  +  L  G +R+ +P M+G  Y  +RL   +R 
Sbjct: 57  LTEAGEIVYQRAQQILTQMQQLDAELTDLNQLHRGHLRLGIPPMVGHVY--ARLFRQYRQ 114

Query: 120 QYPELKLSLFEGGTRDALRMLQQEEVDIAI-ITAQDLQPDFDSQLLIREQMVIAMGAEHP 178
            YP ++L++ E G R   + +   ++D+A+ + + +  PD ++ + +    + A+  + P
Sbjct: 115 TYPNVELTVVEYGGRKIEQAILDGDIDVAVTMLSPNQHPDLNT-VALDHYPIFAVVPDIP 173

Query: 179 L-AELPAVSLNDFFDHELVMFKTGYFHREWILSQAKDLGKKPNIAFETNLINLIKQIVSQ 237
           L   L  ++          +F   +   + I +  +  G  P +A  ++  + +  +V  
Sbjct: 174 LWRSLTTLTWAQISQEPFYLFTHEFTLSDHIHTCCQAAGYTPQVAARSSQWDFLVALVKS 233

Query: 238 GFGITSVLEMAISPK---DDILAKPFDPPVFLNLHIAWKKQRPVSQADRAFV 286
           G G+   L   +  +   D +L  P  P +   L + W ++R VS+   A++
Sbjct: 234 GVGV-CFLPAPLCQRIQGDGVLIYPITPAIDWRLGVVWHRERYVSKTAEAWI 284