Pairwise Alignments

Query, 293 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 296 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  243 bits (621), Expect = 3e-69
 Identities = 126/291 (43%), Positives = 187/291 (64%), Gaps = 4/291 (1%)

Query: 1   MDIRQLKHLDALAITGSFTAAAKKLNMAQPALSQSIKRLELSLGVTLINRTSNKHDKHLA 60
           M++RQL+H   +A   SFT AA++L++AQPALS SIK+ E  LGVTL  R   K    +A
Sbjct: 8   MEVRQLRHFVTVAEWESFTLAAQQLHIAQPALSISIKKFEQQLGVTLFKRDERK----VA 63

Query: 61  LTAEGLVLHQHATLILKQIKQAEAQIRAMANLTSGEVRIAVPGMLGSFYLPSRLMAFRHQ 120
           LT EG VL +HA  IL+Q+  A+  +  +  +  GEVR+  P M+GS++ P  +MAF+  
Sbjct: 64  LTHEGEVLLEHAKRILQQVNDAQLAVDELKGVVKGEVRLGAPSMMGSYFFPQIIMAFKSH 123

Query: 121 YPELKLSLFEGGTRDALRMLQQEEVDIAIITAQDLQPDFDSQLLIREQMVIAMGAEHPLA 180
           +P LK+++ E GT+   RML   E+DI +I   DL  D  +  L+  QMV  +G  H LA
Sbjct: 124 FPNLKMTVIEAGTQSIRRMLLSGELDIGVILNHDLPDDLAADPLLSSQMVAVVGKNHELA 183

Query: 181 ELPAVSLNDFFDHELVMFKTGYFHREWILSQAKDLGKKPNIAFETNLINLIKQIVSQGFG 240
           E   ++  +FF+HELVMFK GYFHR++I    ++     + +FETNL+ +I  IV   + 
Sbjct: 184 ERRHLTFAEFFEHELVMFKPGYFHRDFIDKVCREHKFTADFSFETNLLPMILSIVKHEYA 243

Query: 241 ITSVLEMAISPKDDILAKPFDPPVFLNLHIAWKKQRPVSQADRAFVEFLMK 291
           IT++LE+  S + ++ A PF+PPV+L+L +AW+K+  +S ADR F+EF+ K
Sbjct: 244 ITALLELVTSNEPEVKAIPFEPPVWLDLALAWRKEGYLSNADRTFIEFVKK 294