Pairwise Alignments

Query, 609 a.a., excinuclease ABC, C subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 607 a.a., Excinuclease ABC subunit C from Pseudomonas syringae pv. syringae B728a

 Score =  615 bits (1586), Expect = e-180
 Identities = 309/607 (50%), Positives = 424/607 (69%), Gaps = 9/607 (1%)

Query: 1   MSTGFNAQSFLRTVTSSAGVYRMYDVKGDVIYVGKAKDLKKRLSSYFRKNLGNVKTQALV 60
           M+  F+  +FL T +   GVYRM+D +  ++YVGKAK+LKKRL+SYFRK     KT ALV
Sbjct: 1   MTQTFDPGAFLATCSGRPGVYRMFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALV 60

Query: 61  SHIHHIDVTLTHSETDALLLENDYIKQYMPKYNVLLRDDKSYPYILLSQHEHPRLAYHRG 120
           S I  I+ T+T +ET+ALLLE   IK++ P YN+LLRDDKSYPY+ LS +  PRL+ HRG
Sbjct: 61  SRIAQIETTITGNETEALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDNAFPRLSIHRG 120

Query: 121 PQREKGHYFGPYPNGGAVRESLHLMQKLFPIRQCDDLYYKSRTRPCLQYQLSRCSAPCVG 180
            ++ KG YFGPYP+ GA+RESL L+QK F +RQC+D Y+K+RTRPCLQYQ+ RC  PCVG
Sbjct: 121 TKKAKGRYFGPYPSAGAIRESLSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVG 180

Query: 181 KVSNAEYDEQVKLASLFLKGKDKQVISELVAKMEEAAEQQAYEQAARFRDQIMALRRVAE 240
            V    Y E V+ + +FL+G+   +  EL A ME+AA    +E+AA  RDQ+  LRRV +
Sbjct: 181 LVEPEVYAEDVRHSVMFLEGRSNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQD 240

Query: 241 QQEVSGNTGDMDVIGVHYASGIACFHLLFIREGKIFGSRSYYPTVPAQTDIEEVLRSFLL 300
           QQ + G TGD+DV+      G AC HL+ +R G++ GS++++P V  + ++ EV+ +FL 
Sbjct: 241 QQSMDGGTGDVDVVAAFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLA 300

Query: 301 QFYLNADIQRTIPKEVVISHHFEELHELEAAVSEALNKKFSIKTNVRADRASFLRLAITN 360
           Q++L   I R +P EV+++   ++      AV E    +  I   VR  RA + ++A+TN
Sbjct: 301 QYFLGG-IDRELPGEVIVNVINDDFPAFVDAVEELRGVEMVISHRVRGTRARWQQMAVTN 359

Query: 361 ATNAVMTRLSHKNTVEQRFVLLEEILELNAPIQRMECFDISHTMGESTVASCVVFNREGP 420
           A  A+  RL+++  V  RF  L ++L L  P  R+EC+DISH+ GE+TVASCVVF  EGP
Sbjct: 360 AEQALTARLANRQHVASRFEALAKVLGLEDPPMRLECYDISHSSGEATVASCVVFGPEGP 419

Query: 421 HKAEYRRYNIEGITPGDDYAAMKQAISRRFDKIDA-SGKIPDILFIDGGLGQLRIAQQIV 479
            K++YRR+NIEG+T GDDYAAM QA++RR+ +I A  GK+PD+L +DGG GQ+ +A+ ++
Sbjct: 420 IKSDYRRFNIEGVTAGDDYAAMHQALTRRYSRIKAGEGKLPDVLLVDGGKGQMSMARDVL 479

Query: 480 DEKFVNLDKAPQLI--GVAKGESRKPGLETLIFGDTETSFSLEDDSPALHLIQHIRDESH 537
           +E      + P+LI  GVAKG +RK G ETL   D+   F+L  DSPALHLIQ IRDE+H
Sbjct: 480 NEL-----QVPELILLGVAKGTTRKAGFETLYLNDSAHEFTLPGDSPALHLIQQIRDEAH 534

Query: 538 RFAITGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELAKVPGISI 597
           RFAITGHR RR KTR TSTLE + G+GP RR+ LL+H GGLQE+  AS+ E+AK PGIS 
Sbjct: 535 RFAITGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISK 594

Query: 598 EMAQTIH 604
           ++A++I+
Sbjct: 595 KLAESIY 601