Pairwise Alignments

Query, 610 a.a., hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 625 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  805 bits (2079), Expect = 0.0
 Identities = 408/630 (64%), Positives = 491/630 (77%), Gaps = 25/630 (3%)

Query: 1   MKSKLDKALSLVALGVLGVLHSAHAAPVYEIVNIENYDLQRTGTLEGTRNGYALGINAND 60
           MK +L+KALSLVA+GVLGVL SA AAPVYEI N+ENYDL+  GTLEGTRNGYA+G+N ND
Sbjct: 1   MKLQLEKALSLVAVGVLGVLGSAQAAPVYEIKNLENYDLR--GTLEGTRNGYAMGVNEND 58

Query: 61  ELVGIAKGKKKLSTSDVEGGVIDVEDGIAPEETITYSITAAIVANNFAFIAAQNGAAGAW 120
           ELVGI+KG+KKLST DVEGG+ID +DGIA EE ITYS+   IVANNF F AA NGA GAW
Sbjct: 59  ELVGISKGRKKLSTDDVEGGIIDSDDGIADEEQITYSVLLPIVANNFTFSAAANGATGAW 118

Query: 121 LPTFDSINGTTPPSDTSV-----VNSVDTFYYDINDAGLKVGSMTAPEKKTENTATTDNT 175
           +PTF+SINGTT P DT       +NS+DTFYY I+D G+KVG+ TAP+K  E T + ++ 
Sbjct: 119 VPTFESINGTTDPKDTDTSVPETINSIDTFYYGISDDGVKVGATTAPQKTLEYTGSIEDQ 178

Query: 176 TDYWYYRDYEYRGVAKVGGTEIPLPPPYTQYV-----KDDKTVQLGGWSAATAVNNNNLV 230
            ++WY+RD+E RGVAK    ++ LPPPY +Y      + DK V +GG SAATA++ N LV
Sbjct: 179 -EFWYFRDFELRGVAKTTSGDVALPPPYVEYTSTKEGESDKKVYVGGTSAATAISGN-LV 236

Query: 231 VGYASTDISKYGADRVAYCL---STDNTLPLDVCIQREQYPNDQGTRNIQYQTRAFIWQL 287
            GYASTDIS+YG +RV  CL   ST+  LP+DVC+Q EQYPN  GTRN+QYQTRA++WQL
Sbjct: 237 TGYASTDISRYGGERVQACLDNASTEGALPVDVCVQIEQYPNSTGTRNVQYQTRAYVWQL 296

Query: 288 DNGNASGTALPLGLTPASDNTLTFTAQAMGVNNDGVVAGRSHVYRYGDTGRLHQDAAYWS 347
           DN   +GTALPLGLTPA+D+T T+TAQ +G+N +G V GRSHV R GD      DAAYW+
Sbjct: 297 DNDTVTGTALPLGLTPAADSTFTYTAQGLGINAEGTVVGRSHVNRNGDEDYFRMDAAYWT 356

Query: 348 KNAEGNYQYHWIPM--ADAVSSSIAYDVNDNGIVVGSYRSYISGYLRDKFFYFDINTPDV 405
           +  +G+Y YHW+P+   D V SS+AYD+NDNGI+VGSYRSYI GYLRDKFFY D    D 
Sbjct: 357 RKQDGSYDYHWVPVINVDDVHSSLAYDINDNGILVGSYRSYIQGYLRDKFFYLDTKATDA 416

Query: 406 PYVTPNDFATTTTDLSSKPKDINNKGQVVGYIETTYDKEKPRPKAGFLYE---KSTGEFS 462
             V PNDF +T +DLSS+ K INNKGQVVGYIETT++KEKPRPKAGFL++   K  GEFS
Sbjct: 417 KPVVPNDFYSTLSDLSSRAKSINNKGQVVGYIETTHEKEKPRPKAGFLFDMNAKEGGEFS 476

Query: 463 NLNTLLTCESKGFEKGADGNWTRHKVEVQDGTGKVLSYNSDIQVVEASSINEDGTIVGTA 522
           NLN LLTCESKGFE+G+DGNW RH+VEV DG+GK L+Y++DIQVVEA+SINE G IVGTA
Sbjct: 477 NLNNLLTCESKGFEQGSDGNWQRHQVEVVDGSGKTLTYSADIQVVEANSINEAGVIVGTA 536

Query: 523 FIRKPSYQFDKNGNIIVGENGLPLFELSGNGEPVTAYVPRMVVLKPATNGQ-ACT-VDDS 580
           F+RKP Y+ D+NG  +V ENG  +FEL GNG PVT+Y+PR VVL+PA  G  ACT VD++
Sbjct: 537 FVRKPVYKVDENGLPVV-ENGKFVFELDGNGNPVTSYLPRAVVLEPAGTGAIACTEVDEN 595

Query: 581 TDTGNYERQGAASLAWLLALPLVWLRRRVR 610
           T    YERQGAASL  LL LPLVWLRRRVR
Sbjct: 596 TGGEKYERQGAASLFALLLLPLVWLRRRVR 625