Pairwise Alignments

Query, 610 a.a., hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 607 a.a., hypothetical protein (RefSeq) from Shewanella sp. ANA-3

 Score = 1140 bits (2950), Expect = 0.0
 Identities = 556/610 (91%), Positives = 588/610 (96%), Gaps = 3/610 (0%)

Query: 1   MKSKLDKALSLVALGVLGVLHSAHAAPVYEIVNIENYDLQRTGTLEGTRNGYALGINAND 60
           MKSKLDKALSLVALGVLGVLHSAHAAPVYEIVN++NYDLQ  GTLEGTRNGYALG+NAND
Sbjct: 1   MKSKLDKALSLVALGVLGVLHSAHAAPVYEIVNLDNYDLQ--GTLEGTRNGYALGVNAND 58

Query: 61  ELVGIAKGKKKLSTSDVEGGVIDVEDGIAPEETITYSITAAIVANNFAFIAAQNGAAGAW 120
           ELVGIAKGKKKLSTSDVEGGVIDVEDGIAPEETITYSITAAIVANNFAF+AAQNGAAGAW
Sbjct: 59  ELVGIAKGKKKLSTSDVEGGVIDVEDGIAPEETITYSITAAIVANNFAFVAAQNGAAGAW 118

Query: 121 LPTFDSINGTTPPSDTSVVNSVDTFYYDINDAGLKVGSMTAPEKKTENTATTDNTTDYWY 180
           LPTFDSINGTT PSD SVVNSVDTFYY INDAG+KVGSMTAPEKKTENT TTD+TTDYWY
Sbjct: 119 LPTFDSINGTTAPSDISVVNSVDTFYYGINDAGVKVGSMTAPEKKTENT-TTDDTTDYWY 177

Query: 181 YRDYEYRGVAKVGGTEIPLPPPYTQYVKDDKTVQLGGWSAATAVNNNNLVVGYASTDISK 240
           YRDYEYRGVAKVG +EIPLPPPYTQYVKDDKTV+LGGWSAATAVNNNNLVVGYASTDISK
Sbjct: 178 YRDYEYRGVAKVGDSEIPLPPPYTQYVKDDKTVELGGWSAATAVNNNNLVVGYASTDISK 237

Query: 241 YGADRVAYCLSTDNTLPLDVCIQREQYPNDQGTRNIQYQTRAFIWQLDNGNASGTALPLG 300
           YG DRVAYCL TDNTLPLDVCIQREQYPN QGTRNIQYQTRA++WQLDNG A+GTALPLG
Sbjct: 238 YGGDRVAYCLGTDNTLPLDVCIQREQYPNTQGTRNIQYQTRAYVWQLDNGVATGTALPLG 297

Query: 301 LTPASDNTLTFTAQAMGVNNDGVVAGRSHVYRYGDTGRLHQDAAYWSKNAEGNYQYHWIP 360
           LTPASDN+LTFTAQA+GVNN+GVVAGRSHVYR G+T RL QDAAYWSK+AEGNYQYHWIP
Sbjct: 298 LTPASDNSLTFTAQALGVNNEGVVAGRSHVYRNGNTDRLRQDAAYWSKDAEGNYQYHWIP 357

Query: 361 MADAVSSSIAYDVNDNGIVVGSYRSYISGYLRDKFFYFDINTPDVPYVTPNDFATTTTDL 420
           M D++SSSIAYDVND+GI+VGSYRSYI GYLRDKFFYFD NTP+V YVTPNDFA+TTTDL
Sbjct: 358 MGDSISSSIAYDVNDSGILVGSYRSYIQGYLRDKFFYFDTNTPEVAYVTPNDFASTTTDL 417

Query: 421 SSKPKDINNKGQVVGYIETTYDKEKPRPKAGFLYEKSTGEFSNLNTLLTCESKGFEKGAD 480
           SSKPKDINNKGQVVGYIETTYDKEKPRPKAGFLYEKSTGEFSNLN LLTCESKGFEKG+D
Sbjct: 418 SSKPKDINNKGQVVGYIETTYDKEKPRPKAGFLYEKSTGEFSNLNNLLTCESKGFEKGSD 477

Query: 481 GNWTRHKVEVQDGTGKVLSYNSDIQVVEASSINEDGTIVGTAFIRKPSYQFDKNGNIIVG 540
           GNWTRH+VEVQDGTGKVLSYNSDI VVEA+SINEDGTIVGTAFIRKPSYQFD +GNIIVG
Sbjct: 478 GNWTRHQVEVQDGTGKVLSYNSDILVVEAASINEDGTIVGTAFIRKPSYQFDSDGNIIVG 537

Query: 541 ENGLPLFELSGNGEPVTAYVPRMVVLKPATNGQACTVDDSTDTGNYERQGAASLAWLLAL 600
           ENGLPLFELSG+G+PVTAY+PRMVVLKP+TNG+ACTVDDSTDTGNYER+GAASLAWLLAL
Sbjct: 538 ENGLPLFELSGSGDPVTAYIPRMVVLKPSTNGEACTVDDSTDTGNYERKGAASLAWLLAL 597

Query: 601 PLVWLRRRVR 610
           PLVWLRRR R
Sbjct: 598 PLVWLRRRTR 607