Pairwise Alignments

Query, 640 a.a., ABC transporter, ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 619 a.a., COG0488: ATPase components of ABC transporters with duplicated ATPase domains from Xanthomonas campestris pv. campestris strain 8004

 Score =  602 bits (1553), Expect = e-176
 Identities = 302/625 (48%), Positives = 422/625 (67%), Gaps = 13/625 (2%)

Query: 18  LLQNADFTIERGERVCIVGRNGAGKSSLLKILSGDVLLDEGEFNIDGSVTVSRLQQDPPK 77
           LL+  D TIE GER+ ++GRNGAGKS+L+K+++G++  D+GE  +   V ++RL+Q+ P+
Sbjct: 2   LLEKTDLTIEPGERIALIGRNGAGKSTLMKLIAGELKPDDGEVRVQQGVRIARLEQEVPQ 61

Query: 78  AEQGTVYAYIAAGLKEVGEALEQYHQLSHDVAFAEPEQMERMLNQMQKLQETLDHHNGWQ 137
              G+V+  +A GL E+G  L ++HQLSH   F              K+Q  +D   GW 
Sbjct: 62  GTGGSVFDVVADGLGELGHWLAEFHQLSHAEVFDA--------EAFGKVQAKIDAAEGWA 113

Query: 138 LDSRINQNCELLGLDPDKSLSELSGGWQRKVALARALVSAPDLLLLDEPTNHLDIDTIEW 197
           LD R+++    L LD D   + LSGG +R+V LAR+LV++PD+LLLDEPTNHLDI+ I+W
Sbjct: 114 LDQRVSETLTKLDLDGDAEFARLSGGMKRRVLLARSLVASPDVLLLDEPTNHLDIEAIDW 173

Query: 198 LEKFLLDFQGAIVFISHDRGFIARMATRIVDLDRGVVTSWPGNYQAYLDGKQEWLRVEAE 257
           LE FL  + G+++F++HDR F+  +ATRIV++DRG VTSWPG++  Y   ++E L  +A+
Sbjct: 174 LETFLKGWNGSVLFVTHDRRFLRALATRIVEIDRGQVTSWPGDWANYERRREERLNAQAQ 233

Query: 258 KNALFDKRLADEEVWIRQGVKARRTRNEGRVRALKALRQERSERLNRQGNAKMAVADTER 317
           +NA FDK LA EE+WIRQG+KARRTR+EGRVR L+++R ER +R +  GN +M V+  E 
Sbjct: 234 ENARFDKMLAQEEIWIRQGIKARRTRDEGRVRRLESMRNERVQRRDLTGNVRMEVSQGES 293

Query: 318 SGKLVFDVKDLNYNLPDKNLVKNFNTTVLRGDRIALIGPNGCGKSTLIKLLIEKLQPQSG 377
           SGK V + K++ +    + +VK+F++ + RGDRI LIGPNG GK+TL+KLL+  LQPQ G
Sbjct: 294 SGKKVIEAKEVTFAFGARTMVKDFSSIIQRGDRIGLIGPNGSGKTTLLKLLLGDLQPQQG 353

Query: 378 EVKVGTKLEIAYFDQYREALDPEQTVEDNVGEGKKTITINGQDRHILSYLQDFLFSPMRA 437
           E+++GT L+IAYFDQYR  L  + +  +NV EG+  I ING+ +H+ +YLQDFLF+P RA
Sbjct: 354 EIRIGTNLQIAYFDQYRATLREDWSAIENVAEGRDFIEINGKRKHVHAYLQDFLFTPERA 413

Query: 438 RTPVKALSGGEKNRLLLAKLLIRPANLIILDEPTNDLDIETLELLESLLTEYEGTLLLVS 497
           R P+  LSGGE+NRLLLA+L  +P+NL+++DEPTNDLD+ETLELLE LL EY GTLLLVS
Sbjct: 414 RAPITRLSGGERNRLLLARLFAQPSNLLVMDEPTNDLDVETLELLEELLGEYTGTLLLVS 473

Query: 498 HDRAFIDNTVTSSWWYAGNGHWTEYVGGYQDAIDQ-----GAKFYSEEPSQTNTVEAPAT 552
           HDR F+DN VTS+    G+G   +YVGGY D++ Q            + S T     P  
Sbjct: 474 HDRDFLDNVVTSALVMEGDGLIGDYVGGYSDSLRQRRTAPANAMAVAKASATAAATTPVA 533

Query: 553 AKTAEVKVAEPAKAAKKLSYKFQRELEAMPELMEKLEAEILELQTTVASPDFYSQTQDKI 612
           A      VAE A   +KLSYK  RELE +P L+E LE ++  L   +  P FY +    +
Sbjct: 534 AAAPGPAVAEEAAPKRKLSYKEARELEQLPALIETLEQQVAALTDAMNDPAFYQRDSAAM 593

Query: 613 NQVLSLLADKEKQLEVCFERWEELE 637
               + L D + QL+  + RW EL+
Sbjct: 594 TAHTAALTDAQAQLDAAYARWSELD 618



 Score = 91.7 bits (226), Expect = 9e-23
 Identities = 63/236 (26%), Positives = 120/236 (50%), Gaps = 42/236 (17%)

Query: 10  SLAYGYTPLLQNADFTIERGERVCIVGRNGAGKSSLLKILSGDVLLDEGEFNIDGSVTVS 69
           + A+G   ++++    I+RG+R+ ++G NG+GK++LLK+L GD+   +GE  I  ++ ++
Sbjct: 305 TFAFGARTMVKDFSSIIQRGDRIGLIGPNGSGKTTLLKLLLGDLQPQQGEIRIGTNLQIA 364

Query: 70  RLQQDPPKAEQGTVYAYIAAGLKEVGEALEQYHQLSHDVAFAEPEQMERMLNQMQKLQET 129
              Q               A L+E   A+E    ++    F E     + ++    LQ+ 
Sbjct: 365 YFDQ-------------YRATLREDWSAIE---NVAEGRDFIEINGKRKHVHAY--LQDF 406

Query: 130 LDHHNGWQLDSRINQNCELLGLDPDKS---LSELSGGWQRKVALARALVSAPDLLLLDEP 186
           L                      P+++   ++ LSGG + ++ LAR      +LL++DEP
Sbjct: 407 L--------------------FTPERARAPITRLSGGERNRLLLARLFAQPSNLLVMDEP 446

Query: 187 TNHLDIDTIEWLEKFLLDFQGAIVFISHDRGFIARMATRIVDLD-RGVVTSWPGNY 241
           TN LD++T+E LE+ L ++ G ++ +SHDR F+  + T  + ++  G++  + G Y
Sbjct: 447 TNDLDVETLELLEELLGEYTGTLLLVSHDRDFLDNVVTSALVMEGDGLIGDYVGGY 502