Pairwise Alignments

Query, 640 a.a., ABC transporter, ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 610 a.a., ABC transporter component (NCBI) from Rhodospirillum rubrum S1H

 Score =  445 bits (1144), Expect = e-129
 Identities = 254/640 (39%), Positives = 372/640 (58%), Gaps = 42/640 (6%)

Query: 3   LVRINNGSLAYGYTPLLQNADFTIERGERVCIVGRNGAGKSSLLKILSGDVLLDEGEFNI 62
           L+ + + +L +G  PL +     +E G R+C+VGRNG GKS+LLK+++G VL D GE  +
Sbjct: 5   LLSLRDITLGFGGRPLFRGVSADVEPGARLCLVGRNGGGKSTLLKVMAGQVLADGGELFV 64

Query: 63  DGSVTVSRLQQDPPKAEQGTVYAYIAAGLKEVGEALEQYHQLSHDVAFAEPEQMERMLNQ 122
              V VS LQQ+P   +  ++   +  GL   G    + H+   D+              
Sbjct: 65  QPGVAVSYLQQEPELGDHASLRDVVVEGLP--GPHRGETHRA--DIVL------------ 108

Query: 123 MQKLQETLDHHNGWQLDSRINQNCELLGLDPDKSLSELSGGWQRKVALARALVSAPDLLL 182
                                   E LGLDP+++   LSGG  R+VALARALV   ++LL
Sbjct: 109 ------------------------EALGLDPERAPVGLSGGEARRVALARALVGESEILL 144

Query: 183 LDEPTNHLDIDTIEWLEKFLLDFQGAIVFISHDRGFIARMATRIVDLDRGVVTSWPGNYQ 242
           LDEPTNHLD+  I WLE+ L  ++GA+V ISHDR F+AR+    + LDRGVV      + 
Sbjct: 145 LDEPTNHLDLPAITWLEERLAAYRGALVLISHDRAFLARLTKATLWLDRGVVRRLDQGFA 204

Query: 243 AYLDGKQEWLRVEAEKNALFDKRLADEEVWIRQGVKARRTRNEGRVRALKALRQERSERL 302
           A+   + E L  EA+ +   DK +A+E  W  QG+ ARR RN+GR+  L  LR +R +++
Sbjct: 205 AFEGWRDETLEQEAQASHKLDKLIAEETRWSHQGISARRKRNQGRLARLYDLRHDREQQV 264

Query: 303 NRQGNAKMAVADTERSGKLVFDVKDLNYNLPDKNLVKNFNTTVLRGDRIALIGPNGCGKS 362
             QG AK+       SGKLV + + ++    ++ ++++F+  +LRGDR+ ++GPNG GKS
Sbjct: 265 AVQGLAKLKAEAGGVSGKLVIEAEAVSKAYGERVVLQDFSLRLLRGDRLGIVGPNGAGKS 324

Query: 363 TLIKLLIEKLQPQSGEVKVGTKLEIAYFDQYREALDPEQTVEDNVGE-GKKTITINGQDR 421
           TL+K+L   L P SG V++GT L   Y DQ R +LDP ++V + + + G   + + G+ +
Sbjct: 325 TLLKILTGALAPDSGSVRLGTNLTTTYLDQSRSSLDPTKSVRETLCDMGGDMVNVRGRPQ 384

Query: 422 HILSYLQDFLFSPMRARTPVKALSGGEKNRLLLAKLLIRPANLIILDEPTNDLDIETLEL 481
           H++ Y++DFLF   +A +PV +LSGGE+NRLLLAK L R +NL+ILDEPTNDLD+ETL+L
Sbjct: 385 HVIGYMRDFLFEDRQAVSPVGSLSGGERNRLLLAKALARESNLMILDEPTNDLDMETLDL 444

Query: 482 LESLLTEYEGTLLLVSHDRAFIDNTVTSSWWYAGNGHWTEYVGGYQDAIDQ-GAKFYSEE 540
           L+ +L++YEGTLLLVSHDR F+D  V S+    G G   EY GGY DAI Q G   +   
Sbjct: 445 LQDVLSDYEGTLLLVSHDRDFLDRVVGSTVLMDGAGGAREYPGGYSDAIRQAGGAPWETA 504

Query: 541 PSQTNTVEAPATAKTAEVKVAEPAKAAKKLSYKFQRELEAMPELMEKLEAEILELQTTVA 600
             +T + E    AK +    A+PA    KLSYK QR+LE +P  +++L +EI  L+  + 
Sbjct: 505 RDKTKSGEGRGGAKPSAKSPAKPAARPTKLSYKQQRQLELLPAQIDRLHSEIATLEAALT 564

Query: 601 SPDFYSQTQDKINQVLSLLADKEKQLEVCFERWEELESLK 640
              F+ +  +        +     +L    + W ELE L+
Sbjct: 565 DSQFFVRDPEGYAGKADRMEAARAELAKAEDEWLELEMLR 604