Pairwise Alignments

Query, 640 a.a., ABC transporter, ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 605 a.a., ATP-binding cassette domain-containing protein from Rhodopseudomonas palustris CGA009

 Score =  448 bits (1153), Expect = e-130
 Identities = 250/639 (39%), Positives = 367/639 (57%), Gaps = 45/639 (7%)

Query: 3   LVRINNGSLAYGYTPLLQNADFTIERGERVCIVGRNGAGKSSLLKILSGDVLLDEGEFNI 62
           L+++ + +L +G   L    +  +  G+R+C++GRNG+GKS+LLKI++G +  D G   +
Sbjct: 5   LIQLKDIALTFGGAALFDGVELAVSAGDRLCLIGRNGSGKSTLLKIVAGLIEPDRGSRFV 64

Query: 63  DGSVTVSRLQQDPPKAEQGTVYAYIAAGLKEVGEALEQYHQLSHDVAFAEPEQMERMLNQ 122
               TV  L Q+P      T  AY+ AGL   G+                          
Sbjct: 65  QPGATVRYLPQEPDFDGFATTQAYVEAGLAP-GD-------------------------- 97

Query: 123 MQKLQETLDHHNGWQLDSRINQNCELLGLDPDKSLSELSGGWQRKVALARALVSAPDLLL 182
                   DH+    L        E LGL  D++ + LSGG  R+ ALAR L   PD+LL
Sbjct: 98  --------DHYQAAYL-------LEQLGLHGDENPAHLSGGEARRAALARILAPDPDILL 142

Query: 183 LDEPTNHLDIDTIEWLEKFLLDFQGAIVFISHDRGFIARMATRIVDLDRGVVTSWPGNYQ 242
           LDEPTNHLD+ TIEWLE  L   + AIV ISHDR F++ ++     LDRGV+      + 
Sbjct: 143 LDEPTNHLDLTTIEWLENDLAQRRCAIVMISHDRRFLSNLSRATAWLDRGVIRQIDRGFS 202

Query: 243 AYLDGKQEWLRVEAEKNALFDKRLADEEVWIRQGVKARRTRNEGRVRALKALRQERSERL 302
            +   + + L  E       D+++  EE W+R GV  RR RN  R+  L  LR +R +  
Sbjct: 203 QFESWRDDVLAEEERDQHKLDRKIVMEEHWLRYGVSGRRKRNVKRLAGLHELRAQRRDYR 262

Query: 303 NRQGNAKMAVADTERSGKLVFDVKDLNYNLPDKNLVKNFNTTVLRGDRIALIGPNGCGKS 362
              G A +A A+ ++SGKLV + K ++    D+ +V  F+  + RGDR+ ++GPNG GK+
Sbjct: 263 GPTGAASLAAAEADKSGKLVIEAKSISKAWGDRPIVDAFSIRINRGDRVGIVGPNGAGKT 322

Query: 363 TLIKLLIEKLQPQSGEVKVGTKLEIAYFDQYREALDPEQTVEDNVGEGK-KTITINGQDR 421
           TLI LL   L P SG V++GT LEIA  DQ R++LDP+ T+ D +  G+   + + G+ R
Sbjct: 323 TLISLLTGALAPDSGTVRLGTNLEIATLDQSRDSLDPKSTLSDALTGGRGDQVMVGGKPR 382

Query: 422 HILSYLQDFLFSPMRARTPVKALSGGEKNRLLLAKLLIRPANLIILDEPTNDLDIETLEL 481
           H++ Y++DFLF+  +ARTP++ALSGGE+ RL+LA+ L  P+NL++LDEPTNDLD+ETL++
Sbjct: 383 HVIGYMKDFLFTQEQARTPLEALSGGERGRLMLARSLANPSNLLVLDEPTNDLDLETLDV 442

Query: 482 LESLLTEYEGTLLLVSHDRAFIDNTVTSSWWYAGNGHWTEYVGGYQDAIDQGAKFYSEEP 541
           LE +L +Y+GT++L+SHDR F+D  VTS     G G W EY GGY D + Q     S +P
Sbjct: 443 LEEMLGDYDGTVILISHDRDFLDRVVTSVIAPDGGGKWIEYAGGYSDMLAQRGADLSRQP 502

Query: 542 SQTNTVEAPATAKTAEVKVAEPAKAAKKLSYKFQRELEAMPELMEKLEAEILELQTTVAS 601
           ++    E PA AK A      PA   +KLS+  +  LE +P+ + KLEAEI +LQ  +  
Sbjct: 503 AKAAAAE-PAAAKAAPSPATAPA-PKRKLSFNEKHALETLPKTIAKLEAEIADLQKQLDD 560

Query: 602 PDFYSQTQDKINQVLSLLADKEKQLEVCFERWEELESLK 640
           P  +++ + K ++V + +A    +L     RW ELE L+
Sbjct: 561 PQLFARDRAKFDKVSAAMAKAHDELHAAEHRWLELEMLR 599