Pairwise Alignments

Query, 640 a.a., ABC transporter, ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 620 a.a., ABC transporter from Pedobacter sp. GW460-11-11-14-LB5

 Score =  330 bits (846), Expect = 1e-94
 Identities = 217/632 (34%), Positives = 343/632 (54%), Gaps = 29/632 (4%)

Query: 11  LAYGYTP--LLQNADFTIERGERVCIVGRNGAGKSSLLKILSGDVLLDEGEFNIDGSVTV 68
           L +GY    L +N    I  G+RV +VG NGAGKS+LLK+L+      EG+   + +V +
Sbjct: 10  LGHGYHDEWLFKNLTLGINSGQRVALVGINGAGKSTLLKLLAERFPPLEGKIVKNKAVKI 69

Query: 69  SRLQQDPPKAEQGTVYAYIAAGLKEVGEALEQYHQLSHDVAFAEPEQMERMLNQMQKLQE 128
             L Q+P   E  ++  +I +   +  + +++Y +L  D     P   E+ LN   +L E
Sbjct: 70  GFLDQEPQFTEGFSISDHIFSLENKQQQLIKEYEELIED-----PNPDEKTLN---RLYE 121

Query: 129 TLDHHNGWQLDSRINQNCELLGLDP-DKSLSELSGGWQRKVALARALVSAPDLLLLDEPT 187
            L  HN W+ +  I      +G+    + +S LSGG ++++ALA+ L+  P++L+LDEPT
Sbjct: 122 ELSEHNAWEYEHEIKTILNRMGITHLQQKISTLSGGQKKRLALAKLLIEDPEILVLDEPT 181

Query: 188 NHLDIDTIEWLEKFLLDFQGAIVFISHDRGFIARMATRIVDLDRGVVTSWPGNYQAYLDG 247
           NHLDIDTIEWLEK L   Q  I+ ++HDR F+  +   IV+LDRG + ++ GNY  +L+ 
Sbjct: 182 NHLDIDTIEWLEKLLTTGQKTILLVTHDRYFLDNVCNTIVELDRGKIFNYNGNYAYFLEK 241

Query: 248 KQEWLRVEAEKNALFDKRLADEEVWIRQGVKARRTRNEGRVRALKALRQERSERLNRQG- 306
           K E   ++A       + L  E  W+R+  +AR T++  R+ A   L ++  ++ + Q  
Sbjct: 242 KSEREALDATVLHKNQQLLKKELEWMRRMPQARATKSNARINAFYDLEEKTKKKTDNQSI 301

Query: 307 NAKMAVADTERSGKLVFDVKDLNYNLPDKNLVKNFNTTVLRGDRIALIGPNGCGKSTLIK 366
           N +M ++   R G  + +++ +      + ++ +F+ T  +GDRI L G NG GKSTL+ 
Sbjct: 302 NLQMKMS---RQGGKIIELEHVQKAFDGRPIINDFSYTFKKGDRIGLAGKNGTGKSTLLN 358

Query: 367 LLIEKLQPQSGEVKVGTKLEIAYFDQYREALDPEQTVEDNVGEGKKTITI-NGQDRHILS 425
           ++  +L+P +G+V  G      Y+ Q     DP++ V D V    + I + +G      +
Sbjct: 359 IITSQLKPDNGKVDTGETTVFGYYKQGGLTFDPKERVIDIVKSDAEYIKMADGSVITASA 418

Query: 426 YLQDFLFSPMRARTPVKALSGGEKNRLLLAKLLIRPANLIILDEPTNDLDIETLELLESL 485
            L  FLF P +    V+ LSGGEK RL L K+L++  N +ILDEPTNDLDI+TL +LE  
Sbjct: 419 LLTLFLFPPKKQHGMVEKLSGGEKKRLNLMKVLMQNPNFLILDEPTNDLDIDTLNVLEEF 478

Query: 486 LTEYEGTLLLVSHDRAFIDNTVTSSWWYAGNGHWTEYVGGYQDAIDQGAKFYSEEPS-QT 544
           L  + G L+LVSHDR  +D      +   G G    Y G Y +      +   E+P  +T
Sbjct: 479 LENFPGILMLVSHDRYLLDKMSDQLFIMEGEGVVKIYNGNYSE-----YRLSLEQPKVKT 533

Query: 545 NTVEAPATAKTAEVKVAEPAKAAKKLSYKFQRELEAMPELMEKLEAEILELQTTVASPDF 604
            T ++P     A V    P KAAKKLS+K Q+ELE   + + ++E +I  L  ++   D 
Sbjct: 534 ETKKSP-----APVVEQAPVKAAKKLSFKEQKELEDSEKGIAEMENKIASLNESLVKID- 587

Query: 605 YSQTQDKINQVLSLLADKEKQLEVCFERWEEL 636
            +    KI +V + +   + +L+    RW EL
Sbjct: 588 -ATDYVKIQEVSAEIESLQVKLDEFTMRWLEL 618



 Score = 99.4 bits (246), Expect = 4e-25
 Identities = 75/264 (28%), Positives = 136/264 (51%), Gaps = 46/264 (17%)

Query: 3   LVRINNGSLAYGYTPLLQNADFTIERGERVCIVGRNGAGKSSLLKILSGDVLLDEGEFNI 62
           ++ + +   A+   P++ +  +T ++G+R+ + G+NG GKS+LL I++  +  D G+  +
Sbjct: 314 IIELEHVQKAFDGRPIINDFSYTFKKGDRIGLAGKNGTGKSTLLNIITSQLKPDNGK--V 371

Query: 63  DGSVTVSRLQQDPPKAEQGTVYAYIAAGLKEVGEALEQYHQLSHDVAFAEPEQMERMLNQ 122
           D   T              TV+ Y   G                 + F   +  ER+++ 
Sbjct: 372 DTGET--------------TVFGYYKQG----------------GLTF---DPKERVIDI 398

Query: 123 MQKLQETLDHHNGWQLDSRINQNCEL-LGLDPDKS----LSELSGGWQRKVALARALVSA 177
           ++   E +   +G    S I  +  L L L P K     + +LSGG ++++ L + L+  
Sbjct: 399 VKSDAEYIKMADG----SVITASALLTLFLFPPKKQHGMVEKLSGGEKKRLNLMKVLMQN 454

Query: 178 PDLLLLDEPTNHLDIDTIEWLEKFLLDFQGAIVFISHDRGFIARMATRIVDLD-RGVVTS 236
           P+ L+LDEPTN LDIDT+  LE+FL +F G ++ +SHDR  + +M+ ++  ++  GVV  
Sbjct: 455 PNFLILDEPTNDLDIDTLNVLEEFLENFPGILMLVSHDRYLLDKMSDQLFIMEGEGVVKI 514

Query: 237 WPGNYQAY-LDGKQEWLRVEAEKN 259
           + GNY  Y L  +Q  ++ E +K+
Sbjct: 515 YNGNYSEYRLSLEQPKVKTETKKS 538