Pairwise Alignments

Query, 711 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 711 a.a., 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) from Xanthomonas campestris pv. campestris strain 8004

 Score =  564 bits (1454), Expect = e-165
 Identities = 309/720 (42%), Positives = 442/720 (61%), Gaps = 24/720 (3%)

Query: 2   LNFFAAAPKGFEYSLAQELTEFGATEIKESVAGVYFTAPLTLAYRITLWTRLASRIVLVI 61
           + FFA+  KG EY LA EL   GA++   +++GV     L  A R  LW+RLASR++  +
Sbjct: 1   VKFFASCAKGLEYLLADELLALGASKATATISGVNVEGALRDAQRAVLWSRLASRVLWPL 60

Query: 62  YKGPCESAEQLYNAAYCIDWSAHFSNRNTFSIDFHGTGGFINNTQFGALKIKDAIVDRFR 121
            +  C   + LY     + W  H S  +T S+D H +G  I + ++ A +IKDA+VD  R
Sbjct: 61  TEFDCPDEDALYAGVAELPWHEHLSTGHTLSVDAHVSGTAITHARYAAQRIKDAVVDTIR 120

Query: 122 DDGDARPNVARIDADIKVDAHFRNGVITIAMNFSGPSLHQRGYRSTTGEAPLKENLAANM 181
             G  RP+V     D++++   R G  TI+++  G  LH+RG+R    EAPLKENLAA +
Sbjct: 121 RQGLERPSVDVESPDLRLNLSLRKGRATISVDLGGGPLHRRGWRMAQNEAPLKENLAAAV 180

Query: 182 LVRSGWKAAPTT---LLDPFCGSGTVLIEAALMAADIAPGLQRNRFGFE---HWRRHDKA 235
           L+R+GW  A      LLDP CGSGT+LIE ALMAAD+APGLQR  +G +    WR  D+ 
Sbjct: 181 LLRAGWPRAYADGGGLLDPMCGSGTLLIEGALMAADVAPGLQR--YGSDIPSRWRGFDRD 238

Query: 236 TWHEIVEEAKARASLGVKRCEVKFYGSDIDSRLVALAKRNAQNAGVLELIEFNVANALNV 295
           +W ++V EA+ R S+G    +   +GSD+D   +  AK NAQ AGV E I F V    ++
Sbjct: 239 SWQQLVTEARERDSVGRAALKQVIHGSDMDPHAIRAAKENAQVAGVAEAIWFGVREVGDL 298

Query: 296 EP-PAAEGYLITNPPYGERLGSVSELLQLYYQLGDKFKKEFGGWKVAMLCSDIELISALK 354
           +  P A G ++ NPPY ERL + + L   Y +LGD  ++    W+ ++LC + EL  A  
Sbjct: 299 QTRPQATGVVVCNPPYDERLAADAAL---YRKLGDTLQRVVPQWRASLLCGNAELAYATG 355

Query: 355 LKADKQMKMFNGALECAFNLYTLHAQSTRRDTPVLPEGVDIADIAPAFANRIKKNAKQFE 414
           L+A K+ ++FNGA+ECA  L      +  R TP L     +++ A   ANR++KN ++F+
Sbjct: 356 LRAGKKYQLFNGAIECA--LIVCDPIAVPRRTP-LAAPTALSEGAQMVANRLRKNLQKFK 412

Query: 415 KWAQKEGIDSYRLYDADIPEYNVAVDKYLD-------YVVVQEYMAPASIPEAVTKRRLS 467
           KW  +EGI+ +R+YDAD+PEY+ A+D Y         ++ VQEY APA+IPEA  +RRL 
Sbjct: 413 KWRAREGIECFRVYDADLPEYSAAIDVYQQADGDRRIFLHVQEYAAPATIPEADVRRRLG 472

Query: 468 DVLLALPAAIGVDPHKIIMKTRERQKGTNQYQKLDERKLELITTEYGAKFKLNLTGYLDT 527
           ++L A      V   ++ +K+RER KG ++Y + ++R   +   E+GA  ++NL  YLDT
Sbjct: 473 ELLAAAREVFEVPAERVALKSRERGKGGSKYGRFEQRNEIVNVREHGALLRVNLFDYLDT 532

Query: 528 GLFLDHRLTRRLVGQKSKGRRVLNLFSYTGSASVHAALGGAKSVTTVDMSNTYLAWAKEN 587
           GLFLDHR  R  + Q+SKGRR LNLF YTG ASV AA+ GA + T+VD+S TYL W  +N
Sbjct: 533 GLFLDHRPLRGTMAQQSKGRRFLNLFCYTGVASVQAAVAGASATTSVDLSGTYLQWCADN 592

Query: 588 FALNNLSGKQYEFVQADCLQWIRDCNEQYDLIFIDPPTFSNSKRMEDSFDVQRDHVNLLG 647
            ALN  +G +++ VQAD L W+      +D+IF DPPTFSNS R ED FD+QR+HV LL 
Sbjct: 593 LALNGQAGSKHKLVQADALAWLEAERAHFDVIFCDPPTFSNSARAED-FDIQREHVRLLR 651

Query: 648 MLIKLLSPNGELVFSNNKRKFKMDTETLTKMKIKVQNIDDMTLPLDYKRNPHIHNTWLIT 707
             +  L+P G L FSNN R+FK+D E +++   + + I   T+  D++R+  IH  W +T
Sbjct: 652 AAVARLAPGGVLYFSNNFRRFKLDEEAVSEF-AQCEEISPRTIDPDFERHARIHRAWRLT 710