Pairwise Alignments

Query, 711 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 708 a.a., ribosomal RNA large subunit methyltransferase K/L from Vibrio cholerae E7946 ATCC 55056

 Score =  704 bits (1816), Expect = 0.0
 Identities = 358/710 (50%), Positives = 472/710 (66%), Gaps = 6/710 (0%)

Query: 1   MLNFFAAAPKGFEYSLAQELTEFGATEIKESVAGVYFTAPLTLAYRITLWTRLASRIVLV 60
           M  + A    G E  L +ELT+ G  + K   AGV F A     YR  LW+RLASR V +
Sbjct: 1   MNQYLAVTSNGLENLLVEELTQLGINDAKPVQAGVKFKATNEQIYRCCLWSRLASRFVRI 60

Query: 61  IYKGPCESAEQLYNAAYCIDWSAHFSNRNTFSIDFHGTGGFINNTQFGALKIKDAIVDRF 120
           + +  C++   LY +   ++W  +F +     +DF+GT   I N+Q+GA+K+KDAIVD F
Sbjct: 61  VAEFKCQNDLDLYLSTTSVNWVNYFHSSKKLVVDFNGTNREIRNSQYGAMKVKDAIVDCF 120

Query: 121 RDDGDARPNVARIDADIKVDAHFRNGVITIAMNFSGPSLHQRGYRSTTGEAPLKENLAAN 180
                 RP++++  AD+ +          + ++  G  LH RGYR+  G+APL+E LAA 
Sbjct: 121 TKKNLPRPSISKDLADLHIHVRLHKENALLGIDMVGSGLHARGYRTEAGKAPLRETLAAA 180

Query: 181 MLVRSGWKAAPTTLLDPFCGSGTVLIEAALMAADIAPGLQRNRFGFEHWRRHDKATWHEI 240
           +++RSGW A+   LLDP CGSGT+LIEAA+MAA+IAPGLQR ++GFE     +   W  +
Sbjct: 181 IILRSGWDASKP-LLDPMCGSGTLLIEAAMMAANIAPGLQRKKWGFEALEDFEPELWASV 239

Query: 241 VEEAKARASLGVKRCEVKFYGSDIDSRLVALAKRNAQNAGVLELIEFNVANALNVEPPA- 299
             EA  +   GVK+ E  FYG D D+R++  AK NA+ AGV ELI F + +A  V+ P  
Sbjct: 240 KSEASVQGKRGVKKVETHFYGVDNDNRVLQTAKDNARRAGVEELISFTLGDAAKVKRPEN 299

Query: 300 -AEGYLITNPPYGERLGSVSELLQLYYQLGDKFKKEFGGWKVAMLCSDIELISALKLKAD 358
            AEG +I NPPYGERLG+   L+ LY   G + K EFGG   ++  S  EL+S L+++AD
Sbjct: 300 FAEGIVICNPPYGERLGTHPGLIALYTAFGAQLKAEFGGCHASIFSSSDELLSCLRMRAD 359

Query: 359 KQMKMFNGALECAFNLYTLHAQSTRRDTPVLPEGVDIADIAPAFANRIKKNAKQFEKWAQ 418
           KQ K+ NGAL C    YT+   + R    V  EG     IAP FANR+KKN  +  KWA+
Sbjct: 360 KQFKLNNGALPCHQKNYTI---AMREQNSVSNEGTQEILIAPDFANRLKKNFNKIGKWAK 416

Query: 419 KEGIDSYRLYDADIPEYNVAVDKYLDYVVVQEYMAPASIPEAVTKRRLSDVLLALPAAIG 478
           +EG+D +RLYDAD+PEYNVA+D Y D++++QEY AP  IPE   KRRL+D++ A    + 
Sbjct: 417 REGLDCFRLYDADLPEYNVAIDVYQDHLMIQEYAAPKDIPEEKAKRRLTDIIRAAIQVLD 476

Query: 479 VDPHKIIMKTRERQKGTNQYQKLDERKLELITTEYGAKFKLNLTGYLDTGLFLDHRLTRR 538
           VD + +++K RERQKGT+QY+KL ++   +  TEYG K  +NL  YLDTGLFLDH++TRR
Sbjct: 477 VDANNVVLKVRERQKGTSQYEKLGQQAQTMQITEYGVKLIVNLYDYLDTGLFLDHKITRR 536

Query: 539 LVGQKSKGRRVLNLFSYTGSASVHAALGGAKSVTTVDMSNTYLAWAKENFALNNLSGKQY 598
            +GQ ++G+  LNLF+YTGSA+VHAA GGAKS TTVDMS TYL WAKEN  LN   G+Q+
Sbjct: 537 RLGQMAQGKDFLNLFAYTGSATVHAACGGAKSTTTVDMSKTYLEWAKENMQLNGQVGRQH 596

Query: 599 EFVQADCLQWIRDCNEQYDLIFIDPPTFSNSKRMEDSFDVQRDHVNLLGMLIKLLSPNGE 658
           ++VQADCLQW+ +   QYDLIFIDPPTFSNSKRME +FDVQRDHV L+  L +LL P G 
Sbjct: 597 QYVQADCLQWLANAQSQYDLIFIDPPTFSNSKRMEQTFDVQRDHVTLMTNLKRLLRPEGT 656

Query: 659 LVFSNNKRKFKMDTETLTKMKIKVQNIDDMTLPLDYKRNPHIHNTWLITH 708
           +VFSNNKR FKMD E L  + +  QNI   TLPLD++RN  IHN WLITH
Sbjct: 657 IVFSNNKRHFKMDMEALHALGLNAQNISHQTLPLDFERNKQIHNCWLITH 706