Pairwise Alignments

Query, 690 a.a., ATP-dependent helicase DinG (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 646 a.a., ATP-dependent DNA helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  142 bits (359), Expect = 4e-38
 Identities = 86/254 (33%), Positives = 131/254 (51%), Gaps = 8/254 (3%)

Query: 435 SPIEVGFMLETMLWQKAAGVVLCSATLRALNNFDHFAHQVGLSLKDGSRYLALQSPFDYP 494
           +P+ V       +  K    +  SATL    +F HF  ++GL+    S   +L SPFDY 
Sbjct: 376 TPLSVADKFREQIALKEGAWIFTSATLAVNEDFSHFTERLGLT---PSAQFSLVSPFDYQ 432

Query: 495 NNATLYLPKMKTEPTDDAYTAELAEQILQLIEGEMAT-LVLFASYWQMEKVAELLEGKLA 553
             A L +P+   EP       +L   +  +IE        L  S+  M  + E    +L 
Sbjct: 433 QQAVLCVPRYLPEPNSSGLAEKLVRMLAPVIEHNQGRCFFLCTSHSMMRDLGERFRERLT 492

Query: 554 LEILIQGNAPRQQLLETHKAKCDKGEPSILFGTGSFSEGLDLPGDYLTNLIVTKLPFAVP 613
           L +L+QG   +Q+ L    A+  +   ++L  TG+F EG+D+ GD L+ +I+ KLPF  P
Sbjct: 493 LPVLMQGETSKQKTL----AEFMELGNALLVATGAFWEGIDVRGDTLSCVIIDKLPFTAP 548

Query: 614 TSPVEQAHAEYVKIKGGNPFLQLTIPDASRKLIQSCGRLLRKEQDYGRVTILDRRLVTKR 673
             P+ +A  E  +++GG+PF Q+ +P+A   L Q  GRL+R + D G + I D RLVT+ 
Sbjct: 549 DDPLLKARIEDCRLRGGDPFAQVQLPEAVITLKQGVGRLIRDKNDKGALIICDNRLVTRD 608

Query: 674 YGKSLLDALPPFRR 687
           YG   L +LPP  R
Sbjct: 609 YGGVFLASLPPIPR 622



 Score =  117 bits (293), Expect = 2e-30
 Identities = 91/302 (30%), Positives = 148/302 (49%), Gaps = 35/302 (11%)

Query: 17  IAASLPNFRPRREQNFMVAEISKTLAGDYDKDRRIIVVEAGTGIGKSLSYILGTIPLALA 76
           +  ++P F+PR+ Q  M   ++  +A         +VVEAGTG GK+ +Y++     AL 
Sbjct: 12  LGQAIPGFQPRQAQVDMAKAVASAIANQSQ-----LVVEAGTGTGKTFAYLVP----ALL 62

Query: 77  SKKKVCIATATVALQEQLLHKDLPFFLEQSGLNFRFGLVKGRQRYVCLSKLAMLIGDDNS 136
           S KKV I+T +  LQEQL H+DLP  +   G   +  L+KGR  Y+CL +L        S
Sbjct: 63  SGKKVIISTGSKNLQEQLFHRDLPLMVSALGFFGQVALLKGRANYLCLDRL--------S 114

Query: 137 TQMAMWQTKPDN----SQIAMLQTLLNDVNEGRWNGEIDTLSTPIPDHLWQQIACDKHSC 192
            QM    T   +    +Q+  +++  +    G   GE D L+   P  +   I     +C
Sbjct: 115 RQMVESHTPESDPTLLTQLVKVRSWASSTQSGDL-GECDDLAEDSP--IIPTITSTNDNC 171

Query: 193 -HRQLASHRNCPFHKAREDVDTWDVLIANHSLLFADL---ELGGGVILPNPEDVFYVIDE 248
             ++ AS+++C   KAR      DV++ NH L  ADL   E G G ++P  E   ++ DE
Sbjct: 172 LGKECASYQDCFVSKARRRAMDADVVVVNHHLFLADLAIKETGFGELIPEAE--VFIFDE 229

Query: 249 AHHLPIVARDFSSAQATLRGAADWLEKVG---KTSAKLQNQIK--SNNIIAPAQAMQDHI 303
           AH LP +A  +     + R   D  + +    +T AK   Q++  S+ ++  A  ++  +
Sbjct: 230 AHQLPDIASQYFGQSVSSRQVQDLAKDIELGYRTEAKDMRQLQKVSDKLVQAAMDLRIVL 289

Query: 304 GD 305
           G+
Sbjct: 290 GE 291