Pairwise Alignments

Query, 614 a.a., AMP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 563 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) from Pseudomonas stutzeri RCH2

 Score = 78.2 bits (191), Expect = 9e-19
 Identities = 107/483 (22%), Positives = 204/483 (42%), Gaps = 58/483 (12%)

Query: 65  LTYQELDFISLNKQSDAIAFALNAYGLTRGMKAVLMVTPSLDFFALTFALFKAGIIPVLV 124
           LTY EL  +S     D  A+      L  G +  + +   + +  + F   +AG+I V  
Sbjct: 50  LTYGELYKLS----GDFAAYLQQNTDLQPGDRIAVQLPNLIQYPIVVFGAMRAGLIVVNT 105

Query: 125 DPGMGIKNLKQCFIEAAPDAFIGIPK-AHIARRLLGWGKASVKRLINVDANQSGVTDTLS 183
           +P    + ++  F +A   A + +   AH+A  +L   K  +K ++  +   + +   L 
Sbjct: 106 NPLYTAREMEHQFNDAGAKALVCLANMAHLAEEVLP--KTGIKHVVITEV--ADMLPPLK 161

Query: 184 RLLTGA--PSLASMLSFTTKSSSAKLPEQVEYPM------ALLEHDEMAAILFTSGSTGT 235
           R+L  A    +  M+   +   + KL + +          AL + D++A + +T G+TG 
Sbjct: 162 RMLVNAVVKHVKKMVPAYSLPKAVKLNDALALGRGKPVREALPKSDDVAVLQYTGGTTGV 221

Query: 236 PKGVVYSHGMFEA---QIQALKQDYGIAHGERDLATFPLFSLFGPALGMTSIVPEMDASK 292
            KG + +H    A   Q +AL         E  +A  PL+ ++       +++   +   
Sbjct: 222 AKGAMLTHRNIVANMLQCKALMGSNLNDGSEVLIAPLPLYHIYAFTFHCMAMMLSGN-HN 280

Query: 293 PITANPEFLFAAIE---KYQCSNIFVNPALLERLGRAGEQTDSKNQHKLSSVKRVISAGA 349
            + +NP  L A I+   KY+ S  FV    L  L  A   ++   +   S++K  +S G 
Sbjct: 281 ILISNPRDLPAMIKDLGKYRFSG-FVG---LNTLFVALCNSEDFRKLDFSALKVTLSGGM 336

Query: 350 PATIASIARFSKMLSDGVPVLNSYGATESLPISMIASDELFTTTQVTDNGGGICVGRAID 409
              +A+  R+ ++   G P+   YG TE+ P++ +   E               +G  + 
Sbjct: 337 ALQLATAERWKQV--TGCPICEGYGLTETSPVASVNPIEHIQLGS---------IGIPVP 385

Query: 410 GVKIEIIAITEADIPEWDNRLCLNAGEIGEIVVTGQMVSQSYYHREKATAASKIWDSERQ 469
             + ++I     D+ +         GEIGE+ + G  V + Y+ R +AT   ++ D++  
Sbjct: 386 STQFKVINDDGQDLAQ---------GEIGELCIKGPQVMKGYWQRPEAT--DEVIDAQGW 434

Query: 470 TFRHRMGDLGYLDDSGRLWMCGRKAHRVDATQGGQFAKRYYSIPCERIFNTHPNVKRSAL 529
               + GD+G + + G + +  RK   +  +         Y    E +  + P V +SA 
Sbjct: 435 ---FKTGDIGVIQEDGYIRIVDRKKDMILVS-----GFNVYPNELEDVLASLPGVLQSAA 486

Query: 530 VGV 532
           +GV
Sbjct: 487 IGV 489