Pairwise Alignments

Query, 614 a.a., AMP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 560 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Xanthomonas campestris pv. campestris strain 8004

 Score = 86.3 bits (212), Expect = 3e-21
 Identities = 121/514 (23%), Positives = 215/514 (41%), Gaps = 74/514 (14%)

Query: 65  LTYQELDFISLNKQSDAIAFALNAYGLTRGMKAVLMVTPSLDFFALTFALFKAGIIPVLV 124
           +TY+E D +         A+ L    L +G +  LM+   L +   TF + +AG+  V V
Sbjct: 51  ITYREADQLV----DQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGILRAGLTVVNV 106

Query: 125 DPGMGIKNLKQCFIEAAPDAFIGIPKAHIARRLLGWGKASVKRLINVDANQSGVTDTLSR 184
           +P    + LK   I++     + I               +V+++I     +  +T  L  
Sbjct: 107 NPLYTPRELKHQLIDSGSSVLVVIDNFG----------TTVQQVIADTQVKQVITTGLGD 156

Query: 185 LLTGAPSLASMLSFTTKSSSAKLPE-----------------QVEYPMALLEHDEMAAIL 227
           +L G P  A++++F  K     +PE                 +   P   +E D++A + 
Sbjct: 157 ML-GFPK-AALVNFVVKYVKKLVPEYRINGAIRFRDALALGRKHRVPTLQIEPDDIAFLQ 214

Query: 228 FTSGSTGTPKGVVYSHGMFEAQIQALKQDYG----IAHGERDLAT-FPLFSLFGPALGMT 282
           +T G+TG  KG + +H    A +Q   Q       +  G   + T  PL+ +F  AL   
Sbjct: 215 YTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGHEVVITALPLYHIF--ALTAN 272

Query: 283 SIV-PEMDASKPITANPEFLFAAIEKYQCSNIFVNPALLERLGRAGEQTDSKNQHKLSSV 341
            +V  ++     + +NP  +   +++ + +  F     +  L      T   +Q   SS+
Sbjct: 273 GLVFMKIGGCNHLISNPRDMPGFVKELKKTR-FTAFTGVNTLFNGLLNTPGFDQIDFSSL 331

Query: 342 KRVISAGAPATIASIARFSKMLSDGVPVLNSYGATESLPISMIASDELFTTTQVTDNGGG 401
           K  +  G  A   S+A   K ++ G+ ++ +YG TE+ P + I   +L       D  G 
Sbjct: 332 KMTLGGGM-AVQRSVAERWKQVT-GLTLVEAYGLTETSPAACINPMDL------VDYNGS 383

Query: 402 ICVGRAIDGVKIEIIAITEADIPEWDNRLCLNAGEIGEIVVTGQMVSQSYYHREKATAAS 461
           I +           I  T+A I + D ++ L  GEIGE+ + G  V + Y+  +KA   +
Sbjct: 384 IGLP----------IPSTDACIKDDDGKV-LALGEIGELCIKGPQVMKGYW--KKADETA 430

Query: 462 KIWDSERQTFRHRMGDLGYLDDSGRLWMCGRKAHRVDATQGGQFAKRYYSIPCERIFNTH 521
           K+ D+E        GD+  +D+ G +++  RK   +  +         Y    E +  T 
Sbjct: 431 KVMDAEGWL---HTGDIARMDERGFVYIVDRKKDMILVS-----GFNVYPNEIEDVIATM 482

Query: 522 PNVKRSALVGVTVKGQHGVGEIKPLICIELDQSL 555
           P V   A VGV        GEI  ++ ++ DQ+L
Sbjct: 483 PGVLEVAAVGVP---DEKSGEIVKVVIVKKDQAL 513