Pairwise Alignments

Query, 614 a.a., AMP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 564 a.a., AMP-dependent synthetase and ligase (NCBI) from Rhodospirillum rubrum S1H

 Score = 76.3 bits (186), Expect = 3e-18
 Identities = 104/494 (21%), Positives = 193/494 (39%), Gaps = 72/494 (14%)

Query: 25  DNPTKPKDANICRHLKLAAHHIPHHLAVAVQQGKGKSFANLTYQELDFISLNKQSDAIAF 84
           D+P  P        L L +  +   L   + +       +   ++  +  L +Q D    
Sbjct: 4   DSPLPPSSLTTAPRLPLPSGPVCAMLDAIIARFPDNPAIDFLGRKWTYRELGEQIDRACA 63

Query: 85  ALNAYGLTRGMKAVLMVTPSLDFFALTFALFKAGIIPVLVDPGMGIKNLKQCFIEAAPDA 144
              + G+  G +  L +  +  +    + + KAG I V  +P    + L++   ++    
Sbjct: 64  GFQSLGVEPGTRVGLCLPNTPYYIICYYGVLKAGGIVVNFNPLYVERELRELVEDSGTTL 123

Query: 145 FIGIPKAHIARRLLGW-GKASVKRLINVDANQSGVTDTLSRLLTGAPSLASMLSFTT--- 200
            + +    I  ++    G  +++R+  V  + S +  ++  LL      + +    T   
Sbjct: 124 MVTLDLRQIYPKVAALLGDTALERI--VVCSMSAILPSVKSLLFSVLKRSELADVPTDRR 181

Query: 201 -----KSSSAKLPEQVEYPMALLEHDEMAAILFTSGSTGTPKGVVYSHGMFEAQIQALKQ 255
                K  + K P +   P+A+     +A + +T G+TG PKG + +H      +  +  
Sbjct: 182 HIGFAKLIATKTPPR---PVAIDPATAVAVLQYTGGTTGLPKGAMLTHANVTGNLTQILG 238

Query: 256 DYGIAH--GERDLATFPLFSLFGPALGMT---------SIVPEMDAS---KPITANPEFL 301
            +  A    E+ LA  P F +F   + M           ++P  D     K I      L
Sbjct: 239 WFPEARWGEEKMLAVLPFFHVFAMTVAMNVALALGAELILLPRFDLETVLKTIARKKPTL 298

Query: 302 FAAIEKYQCSNIFVNPALLERLGRAGEQTDSKNQHKLSSVKRVISAGAPATIASIARFSK 361
           F  +           P +   +  A     +K  + LSS++  +S GAP  I    RF +
Sbjct: 299 FPGV-----------PTIYSAIIGA----VAKTPYDLSSLRFCLSGGAPLPIEVKTRFEE 343

Query: 362 MLSDGVPVLNSYGATESLPISMIASDELFTTTQVTDNGGGI---CVGRAIDGVKIEIIAI 418
           +   G  ++  YG +E+ P+  +  + L          G I    +G+ + G  +EI ++
Sbjct: 344 L--TGCTLIEGYGLSEASPV--VCCNPL---------DGAIKPGSIGQPLPGTTVEIRSV 390

Query: 419 TEADIPEWDNRLCLNAGEIGEIVVTGQMVSQSYYHREKATAASKIWDSERQTFRHRMGDL 478
                   D  L +  GE GEI V G  V   Y+ R + T  + I D   +T     GD+
Sbjct: 391 L-------DPALIVPRGERGEICVRGPQVMAGYWRRPQDTEDTFI-DGALRT-----GDI 437

Query: 479 GYLDDSGRLWMCGR 492
           GY+DD G +++  R
Sbjct: 438 GYIDDEGYVFLVDR 451