Pairwise Alignments

Query, 826 a.a., bacterial surface antigen (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 896 a.a., outer membrane protein, OMP85 family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  205 bits (522), Expect = 8e-57
 Identities = 194/814 (23%), Positives = 348/814 (42%), Gaps = 101/814 (12%)

Query: 31  VTDIQVEGLQRVALGAALLSLPVKVGDTVDQLKLQQAIKSLYASTNFENISVSHEDG--- 87
           + D++V G + +     L+ L  + GD +D   + + IK ++    F ++  S E G   
Sbjct: 166 IADVKVRGTKVLDPDVVLMRLSTRKGDPIDPAAINKEIKRIWDLGYFSDVQASVEQGGDG 225

Query: 88  -VLIVKVTERPTISAVTFEGNKDIKDEQLQESLDGSGVKVGESLDRTMLTGIEKGLQDFY 146
            VL+  VTE+P I  +  EG+  +  + +  ++     K G  L+  +L    + + + Y
Sbjct: 226 TVLVYTVTEKPRIDNIVIEGSDKVGHDDILAAMSS---KTGSVLNDKLLAQDLQKVTELY 282

Query: 147 YGVGKYGAKVEAQV-INLPRNRVELKFKFTESLAAEIRQINVVGNHEFTDAELIGMLELK 205
              G Y A V  +V          L     E     I+++ + G  E +++E+  +L L 
Sbjct: 283 RKEGFYLAHVTHRVEARQGAASATLVLNVEEGNKLYIKKVKIEGLKELSESEVKDILALS 342

Query: 206 DYVAWWDLFGERRYQKQKLQADLETIKTYYHNKGYIRFEVTSTQVAMTPDRKGLYITINV 265
           +   +    G    + + L+ D   I  Y  N GY+   V++ +V    D  G+ ++  V
Sbjct: 343 ERGMFSWFTGTGVLKDELLERDSAAITAYCLNHGYVDALVSAPKVDYEED--GIIVSFAV 400

Query: 266 NEGEKYKVKDVNLTGDLMGREELMKSILPI---KAGDMYNGGDVTFAEE-MYSKYLGRFG 321
            EG +YK+  +   G+L+  +E +  ++ +   K  + Y   DV   ++ + S Y   +G
Sbjct: 401 KEGPRYKLGKIGFDGELIDTDERLLKVVKLDDHKKDNQYFALDVMQTDDKLLSDYYADYG 460

Query: 322 YAYPEVKTYPEIDDKTKEVTLNINIKPGKRVYVRSINFTGNTVTEDEVMRRELRQMEGAW 381
           YA+ E+ +  +   +   + +   I+  ++VY+  +   GN  T D V+ RE+R  +G  
Sbjct: 461 YAFAEINSRTQKSAEEHVIDVTYVIRKRQKVYINRVLVEGNQKTRDNVVLREMRIADGDM 520

Query: 382 LNSAQVEQSKARLNRLGFFETVDTETIQVPGTDDLVDVAVKVKEQPSGSFNAGVGYGTES 441
              A++ +S  RLNR  +F  VDTE +     D+ VD+ VKVKEQ +G+   GVGY T  
Sbjct: 521 FEGAKLRRSNERLNRTRYFSQVDTELVPTQKEDE-VDLKVKVKEQNTGALIGGVGYSTFY 579

Query: 442 GLSLQFGVQQNNFLGTGNQAGVSLSTNKYSKNVNLSYTDPYWTKDGVSLGGSVYWNEFDA 501
              +   + + N  G G  A +    +    +   S+T+P      +S G   Y      
Sbjct: 580 QFGVSGTIMERNLFGKGYYASLQAFFSGKRNSFIASFTNPRVNDGDLSFGNDAY-----I 634

Query: 502 NEANLERYKNSSYGVALNSGFPINEYNRINGGIGYRHNTISEISAYEQALRFYNIYRDDD 561
           +    + +  ++ G  +    P+ EY+ +  G GYR             L  Y +Y  DD
Sbjct: 635 SREYFDDFSKNTIGDTIRFALPVGEYSTV--GWGYR-------------LDRYELYDIDD 679

Query: 562 PNADL----SFDNFELSLGWYRSTLNRGTFPTDGSSQRLSGKMTVPASDLQYFKTDFDTN 617
             A +      +N   S+   R T +     TD   +   G +    ++        D +
Sbjct: 680 DAAKIIKEREGENIS-SVAHVRFTRD----TTDSKEKPTKGTIFKTFNEFGGGPIGGDDD 734

Query: 618 YYFPINRSQSFVLLARGRLGYG--NGYGQYNDNDQILPFWENYYSGGSSSLRGFKSNSVG 675
           +  P+   Q++  LA   + +G   G     +    +P +E +Y GG  S+RG+ S  + 
Sbjct: 735 FIKPVVEFQAYHQLAPNHVLHGRTRGGAVLENGQGDVPVFERFYIGGIDSIRGYNSRDIS 794

Query: 676 PRSFYLFRGSEPCSPDPSGDGCSLPGDPNKIQVSSGRSIGGNAIATASLELI-VPTPFLD 734
           PR             DP                 SG  IGG+ +A  +LE I V  P L 
Sbjct: 795 PR-------------DP----------------ESGDRIGGDRMAFVNLEYIWVFKPDLG 825

Query: 735 EAYTNSVRTSFFVDAGNVWDTEFDYAKYQTLPAEEFDKLQDYSDPARIRASWGVSLQWLS 794
            A         F D G  +D+  ++               ++ D   ++ S G+ ++W S
Sbjct: 826 LALVP------FFDMGINYDSSAEF---------------NWDD--ELKKSVGLEMRWRS 862

Query: 795 PMGPMVFSLAWPVKE-YEGDQ-TEIFSFNIGKTF 826
           PMG + F+  +P+ E  +G+Q +  F F++G+ F
Sbjct: 863 PMGDLRFAYGFPLDEGRDGEQHSGRFEFSMGQFF 896