Pairwise Alignments

Query, 321 a.a., outer membrane porin, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 344 a.a., porin from Burkholderia phytofirmans PsJN

 Score = 67.0 bits (162), Expect = 6e-16
 Identities = 84/339 (24%), Positives = 139/339 (41%), Gaps = 33/339 (9%)

Query: 9   LASALASATLASAYAAEPLTVYGKLNVTAQSNDENGDATTTIQSNA-----SRFGVKGDF 63
           LA+     T  +A+A   +++YG  +  A      G +  T Q  +     S +G+ G  
Sbjct: 13  LAALSLCITAGAAHAQSSVSLYGLADAFAGVVRTPGASGNTWQVGSGGLSTSYWGMSGAE 72

Query: 64  ELSSSLSAFYTVE--YQV---DTGAASSDNFTARNQFVGLKGDFGSFSVGRNDTLLKISQ 118
           +L   + A +T+E  Y++     GA +  +F  R  FVGL G FG  ++GRND+LL +S 
Sbjct: 73  DLGGGMKAIFTLESFYRIISGQLGAYNGQSFFGRRAFVGLSGPFGQLTLGRNDSLLFVST 132

Query: 119 GDVDQFND---LSGDLGKLFKGEVRAA----------QTATYLTPSFGDFVFGVTYVAEG 165
              + F +    S  +   F G    A           +  Y TP  G     + Y   G
Sbjct: 133 LLFNPFGNSFVFSPIVVHSFLGSAMGAASVQSDTAIDDSIVYQTPEIGGLTGSLQYSNAG 192

Query: 166 NDVKSQFAQDGFSVAAMYGDAKLKKTAVYAALAYDS-DVSGYEVLRASLQAKLAGIKLGG 224
             V     Q  +S   +Y       TA   +L   S  ++G     A L      ++   
Sbjct: 193 --VAGHAGQANYSANVLYFAGPFSATAAVQSLHTASLFLNGATEQTAWLVGAAYRLQAVK 250

Query: 225 MYQQQEQTYKLDKTTSLPVEV--TAESATGYLLSAAYDINAVTLKAQFQDMEDLGDSWSV 282
           +Y Q E+    ++ T   V+V  +A+  TG +L +     A TL+   Q  +    +  +
Sbjct: 251 LYLQYERVTNNNELTDDTVQVGASAQVGTGSILLSW----AGTLRQPAQGADVRWSTVVL 306

Query: 283 GADYNLGKPTKVFAFYTNRSLEANTDDDKYIAIGLEHKF 321
           G DY L K T V+A +   ++  +      +  G+  KF
Sbjct: 307 GYDYPLSKRTDVYAAWRYDTM-TSVSSGNSLGAGIRMKF 344