Pairwise Alignments

Query, 720 a.a., TPR domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 584 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 54.7 bits (130), Expect = 1e-11
 Identities = 68/312 (21%), Positives = 132/312 (42%), Gaps = 32/312 (10%)

Query: 228 LSNRSNYPSMKTHLQLQL-----AKVYRDLKQWDEALKNAHEAAAGFKKLGNDTYLSSCM 282
           L+ +  Y   K H  L L       + R    +D+AL N  EA   +K+L +   + S  
Sbjct: 131 LAAKDVYERTKDHKMLALIAEEVGMINRKQDLYDDALTNFREALTTYKQLKDSLSVISAS 190

Query: 283 TVIAMVYGEQGDWNRAIDYYLNAQQLDAKRGNYIAQGLNFHNLGQAYSHLNDNVNALKYL 342
             IA VY  + +W+    YY NA ++ A + NY+++    H LG  Y  + +   A +Y 
Sbjct: 191 LNIARVYLFKSEWDSCSLYYNNALEI-AVQKNYLSEITILHELGILYRSMQNLSEAERYF 249

Query: 343 LMANKIFTDKQSHHY----LVYNELLIGEIAQSKQDWTLMMSHAEHALALASNLALLDEQ 398
           L A +  TD++  +     L Y  + +G+             +A   L +++N +    Q
Sbjct: 250 LAAYEKETDEEKKYMECLSLGYLYMQMGQ-----------TENARKYLIMSANSSKAYTQ 298

Query: 399 KSALTQIALSAEKMQDQAKVISTQKRIIELNNTSKNTAKDPAVAASVLAEQQLKLELNMV 458
            SA   +    + + +  + I   +    + N     A +   +  ++A  Q K E   +
Sbjct: 299 ISAYDCLYFLEKDIDNFEEAIVYHELADSITN-----AMEELNSRELIASLQKKYENEKL 353

Query: 459 QGKLNDAIE-SAKETNKLLALSGVILTLLVIAIIALLNQRQKSRRQNESLLQLTLEEPFT 517
           +   ND ++   + TN    L G I  L V+A +     + ++ ++  + ++L ++E   
Sbjct: 354 R---NDNLQMKVRYTN--FILWGTIAFLFVVACMCYYYYKNRNNKKKIAEIELQIQENEE 408

Query: 518 HHKGYAALLRDL 529
             + Y   + D+
Sbjct: 409 EIERYQQEIEDI 420