Pairwise Alignments

Query, 518 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 524 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

 Score =  228 bits (581), Expect = 4e-64
 Identities = 149/514 (28%), Positives = 271/514 (52%), Gaps = 13/514 (2%)

Query: 10  QLALLQQKLHSAKLALDEVNEDRNAKLQTLLQFIGHLSLACKGQNLELDNKLAKLRHNLN 69
           +L  L+ +L   +L   + +   N + Q L + +  L+  C+G +  L+  L +L   L 
Sbjct: 14  ELQKLKSQLEQVRLTQRDTSFKFNREQQVLKRMVTSLATTCRGSSSRLNQSLEELCFALE 73

Query: 70  TFDRVDEALPELVDVERLLKGQYHHVMVQLEESRAGLAQVIRQIQRVNSVPEKLKKEI-N 128
               +   +P+L  +ER+LK Q   +  Q     + L      + RV  +P K+K+++ +
Sbjct: 74  QQKDISTLIPKLAVLERMLKQQSLAMDKQTSHLDSQLQHSGETLLRVPGLPAKIKRDLRD 133

Query: 129 YFKQDLAKPFHTVWEYIPKVKQIIGFYDTILQQQF-NGTEKLDVLPKH--RQLAHELA-- 183
                 A+P     E   +  +++  Y+  ++ Q  N    L+ L +   R+L H LA  
Sbjct: 134 LLSFSAAQPL----EKTQQALRLLEIYERAVKIQCANPNLALNELTQQADRELLHRLAVD 189

Query: 184 --QMISEIEFRKDQRDQVLVIKEMLASDIEIDNLLEAYQTILSLLLDNIAREKSASQEFL 241
              +I+E++F  +  DQ+  I+  L   +    LLE    +L L++D    E+ A++ FL
Sbjct: 190 LQHLITELDFNGESGDQLTDIRTKLLLGVNTHTLLELTLEVLRLVVDGSHAERKAAEAFL 249

Query: 242 YALNDALAAVREVVSESYNHNQRSFQLKTQLNREINSRVDNVGEAIIDTDDIVDLKARLT 301
             +N ++    +  +++   +Q     + ++N E++S V     A+ +  ++  LK ++ 
Sbjct: 250 EQVNLSIGNNLKSATQNLEQSQSYMAHRQEMNGELSSLVARSQTALKEQTELEQLKLKMA 309

Query: 302 EQLNSIRSALARKETLEQREQALLRKSMETMRKELNELSNEANTYKERLFEQQKLNLLDS 361
             L  + S   R    EQREQALL + M   + ++  LS+ A  Y+ RL +Q     LD 
Sbjct: 310 PLLREMSSLSERLLLAEQREQALLER-MRYSKDQMEALSDLAQDYRRRLEDQALRAQLDP 368

Query: 362 LTQLPNRAALEERMELEYRNYQRHKSPLWIAVADIDHFKIINDSFGHSTGDKTLQVIAMA 421
           LT++ NR++  ER+E EYR + R +  L + + DID FK INDSFG++ GDK L +IA  
Sbjct: 369 LTKVYNRSSFTERLEHEYRRWIRTQHNLRVVLFDIDKFKSINDSFGYTAGDKALSIIART 428

Query: 422 LKNSLRDTEFVARYGGEEFVLILPDIDDSDIAQLLNRVREKVKNIPFKFKNQRITVTVSI 481
           +K  LRD++ VAR+ GEEF+L+LP+  D++  Q++++++  V  +PFKF+++ +T+T+S 
Sbjct: 429 IKKELRDSDTVARFSGEEFILLLPERSDNESYQIIHQIQLNVSKLPFKFRDKSLTITLSA 488

Query: 482 GAARVMGNELIHETFERADAALYKAKHESRDRVV 515
            + R M ++      +R +  L +AKH    ++V
Sbjct: 489 ASIRFMDSDTPETVLDRLNLTLSEAKHIGPSQLV 522