Pairwise Alignments

Query, 518 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 690 a.a., GGDEF domain protein from Pseudomonas syringae pv. syringae B728a

 Score =  174 bits (440), Expect = 1e-47
 Identities = 105/349 (30%), Positives = 176/349 (50%), Gaps = 10/349 (2%)

Query: 173 PKHRQLAHELAQ----MISEIEFRKDQRDQVLVIKEMLASDIEIDNLLEAYQTILSLLLD 228
           P +  +A  + Q    ++ ++   +  R QV  ++  L   +    LL     +  L+L 
Sbjct: 342 PSYSSVAAHIEQTLLGLLDDLTLSEHFRPQVEDMQLRLKHGLNWYELLPILDDLAVLML- 400

Query: 229 NIAREKSASQEF---LYALNDALAAVREVVSESYNHNQRSFQLKTQLNREINSRVDNVGE 285
             A      QEF   L  LN+ L + +  +  +   +         LN ++  +V  +  
Sbjct: 401 --AINNGGQQEFGTYLKQLNERLESFQSHLQAASEDHAEDQSTARDLNEQLREQVGGLQS 458

Query: 286 AIIDTDDIVDLKARLTEQLNSIRSALARKETLEQREQALLRKSMETMRKELNELSNEANT 345
           ++ D  D+  LK  L  +L ++   +   +      +  +   ++ +   +  +  EA  
Sbjct: 459 SVQDASDLPSLKRVLDNRLEALLGTMDHYQLKRDAREREVASRLQGLAARVASMEQEALG 518

Query: 346 YKERLFEQQKLNLLDSLTQLPNRAALEERMELEYRNYQRHKSPLWIAVADIDHFKIINDS 405
           ++  L EQ++  L+D LT LPNRAA  ER+E E   +   K+ L + + D+DHFK IND 
Sbjct: 519 FRTHLEEQRQKALIDPLTGLPNRAAWGERLEREMARWHEEKNSLLVCILDLDHFKRINDG 578

Query: 406 FGHSTGDKTLQVIAMALKNSLRDTEFVARYGGEEFVLILPDIDDSDIAQLLNRVREKVKN 465
           +GH  GDK L+++A  L   LR  +F+AR+GGEEFV++LP    +   +LL+ +R  V++
Sbjct: 579 YGHLAGDKVLKIVANVLSKRLRADDFMARFGGEEFVMLLPATPPATGLKLLDELRAAVES 638

Query: 466 IPFKFKNQRITVTVSIGAARVMGNELIHETFERADAALYKAKHESRDRV 514
            PF FK +R+T+TVSIG      +E      +RAD ALYKAK   R+R+
Sbjct: 639 CPFHFKGERVTITVSIGMTAFRPSERSDTAIKRADQALYKAKENGRNRI 687