Pairwise Alignments

Query, 518 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 330 a.a., diguanylate cyclase from Rhodopseudomonas palustris CGA009

 Score =  115 bits (287), Expect = 3e-30
 Identities = 80/247 (32%), Positives = 122/247 (49%), Gaps = 21/247 (8%)

Query: 274 REINSRVDNVGEAIIDTDDIVDLKARLTEQLNSIRSALARKETLEQREQALLRKSMETMR 333
           RE+ SR     E +  T D VD+   +T  +N +              + L RK   ++ 
Sbjct: 94  REVESRGSFTLETVNRTKDGVDVAVEVT--VNFV--------------ECLGRKMNCSIV 137

Query: 334 KELNELSNEANTYKERLFEQQKLNLLDSLTQLPNRAALEERMELEYRNYQRHKSPLWIAV 393
           +++ E    A    E   +  + NL D LT + NR   +  +   Y  + R  +PL + +
Sbjct: 138 RDITERKRAAEQLAEMHRKLVQANLTDELTAIANRRRFDGVLSTSYATHMRSGAPLSLIL 197

Query: 394 ADIDHFKIINDSFGHSTGDKTLQVIAMAL-KNSLRDTEFVARYGGEEFVLILPDIDDSDI 452
            DIDHFK  ND +GH  GD+ LQ IA  + +   R  +  AR+GGEEFV ILPD D++  
Sbjct: 198 LDIDHFKAFNDRYGHLEGDRCLQRIAEVIDRRMFRAADLAARWGGEEFVCILPDTDEAGA 257

Query: 453 AQLLNRVREKVKN--IPFKFKNQRITVTVSIG--AARVMGNELIHETFERADAALYKAKH 508
             +   +RE + +  IP +       VT S+G   A  + ++  H  FE ADA LY+AK+
Sbjct: 258 LAVATALREAILDLAIPHEASPIARVVTASLGVVTATCVPDKTAHSLFETADALLYEAKN 317

Query: 509 ESRDRVV 515
             R+R+V
Sbjct: 318 LGRNRIV 324