Pairwise Alignments

Query, 518 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 534 a.a., diguanylate cyclase from Herbaspirillum seropedicae SmR1

 Score =  146 bits (369), Expect = 2e-39
 Identities = 132/526 (25%), Positives = 235/526 (44%), Gaps = 69/526 (13%)

Query: 22  KLALDEVNEDR-NAKLQTLLQFIGHLSLACKGQNLELDNKLAKLRHNLNTFDRVDEALPE 80
           ++A +E+  D   A  +++L           G+N  L  +L + R N N +   +  L E
Sbjct: 34  RIAYEEIQGDGPGASAESVLAAFATKLSRQPGENGLLGTRLVRAREN-NDWAEFERQLIE 92

Query: 81  LVDVE---RLLKGQYHH---VMVQLEES-----------RAGLAQV-IRQIQRVNSVPEK 122
             +     R L  Q  H   V + LE             R  LA+V +  +  + S   +
Sbjct: 93  FAEENWQNRPLGPQVQHGELVPIDLEREFIRDSKKEKMLREMLARVLVFNLPSLLSTAPE 152

Query: 123 LKKEINYFKQDLAKPF--HTVWEYIPKVKQIIGFYDTILQQQFNGTEKLDVLPKHRQLAH 180
           L  E     Q+L   F    + E I ++KQ+           F    K D + + + L  
Sbjct: 153 LANESRNSGQELKTAFSEQAMNEIIARLKQL----------SFQIELKTDDMAQQQDLLM 202

Query: 181 ELAQMISE-----IEFRKDQRDQVLVIKEMLASDIEIDNLLEAYQTILS------LLLDN 229
            L Q++ E     +E       Q+  ++ ++A  +   +L +A + +        LL + 
Sbjct: 203 RLFQLLLENINGLLEQGSWLSSQIETVQSLIAGPLSTTSLADATKNLKEVIYKQGLLKNT 262

Query: 230 IAREKSASQEFLYALNDALAAVREVVSESYNHNQRSFQLKTQLNREINSRVDNVGEAIID 289
           ++ EK   +  +    D L+A+    +++Y    R F                  + I  
Sbjct: 263 LSEEKVVVKNMMLTFVDRLSAMVST-TDNYQRTIRGFS-----------------QQISQ 304

Query: 290 TDDIVDLKARLTEQLNSIRSALARKETLEQREQALLRKSMETMRKELNELSNEANTYKER 349
             +I DL + L+E +   + A        Q E    R +ME  R+E+ +      T +++
Sbjct: 305 AGNIADLNSVLSEIMTETQKA--------QEEATRSRDAMEDARQEVEKAEERIQTLEQQ 356

Query: 350 LFEQQKLNLLDSLTQLPNRAALEERMELEYRNYQRHKSPLWIAVADIDHFKIINDSFGHS 409
           L +  +L   D LT   NR  ++E ++ E  N  R  +PL +A+ D+D FK IND+ GH+
Sbjct: 357 LLQMGELVREDQLTGSLNRRGMDESLDREITNALRRDTPLCVALLDLDDFKRINDTHGHA 416

Query: 410 TGDKTLQVIAMALKNSLRDTEFVARYGGEEFVLILPDIDDSDIAQLLNRVREKVKNIPFK 469
           TGD+ L  +   ++ +LR  + +AR+GGEEF++++P+    D  Q++ RV+ ++    F 
Sbjct: 417 TGDEVLVHMVQVIRETLRKLDVIARFGGEEFLVLMPETAPQDAVQIITRVQRELTKRIFM 476

Query: 470 FKNQRITVTVSIGAARVMGNELIHETFERADAALYKAKHESRDRVV 515
            ++QR+ +T S G A     E   +  +RAD ALYKAK+  ++R+V
Sbjct: 477 HESQRLLITFSAGVAVYHPGESQADLLKRADVALYKAKNAGKNRIV 522