Pairwise Alignments

Query, 448 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 491 a.a., Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM, homolog from Xanthomonas campestris pv. campestris strain 8004

 Score = 89.7 bits (221), Expect = 2e-22
 Identities = 99/362 (27%), Positives = 160/362 (44%), Gaps = 25/362 (6%)

Query: 13  LLQEPIAKLFWRYTIPTIASMLVTGVYVTIDGIFVGHYLGETGLAGMMLAYPVGAILYAI 72
           L + PI K    + +P +A  +   +  +I+ I++G YLGE  L     A  +  + + I
Sbjct: 7   LTEGPIGKNLLLFALPILAGNIAQSLNGSINAIWIGRYLGEAALTAAANANSI--MFFLI 64

Query: 73  GAMIGMGSAALVSIN--LGQGNVAKARKLLGNAFSLCLLAGAFFALVGGVFSRDILIALG 130
           G++ G+G AA + I   +G  ++A+ARK++G + +      A  A+ G   +  +L A+G
Sbjct: 65  GSVFGIGMAATILIGQAMGARDIAQARKVMGTSATFFGGLSALIAVAGWWLAPHLLAAMG 124

Query: 131 AEGEILENANEYLFWYFALCHFPIISMAFTTLLRNDGRPSMVTFVLILGGVLNTFLDWLF 190
                L  A +YL   F       +    +  LR  G        L+L  VL+   + L 
Sbjct: 125 TPPASLALAEDYLRVIFVAMPTIYLFAFLSAALRGTGDARTPFRFLLLSVVLDIVFNPLL 184

Query: 191 IV-VFPF---GLAGAAIATMLSQAVTGLLCLQHFFGARTQLKINLEQMKL-KLDNCINIA 245
           I  V PF   G+AGAA AT+L+Q+V     L +       L +    + L ++D  I  A
Sbjct: 185 IFGVGPFPQLGIAGAAWATVLAQSVALAGLLLYLRSRGHVLWLGRRDLALFRIDPAILRA 244

Query: 246 RV------GLPSFLMNLYLSIVLTLHNTAFLWVGGPLHVAAYGVVSYTEAFFYLIFEGIA 299
            V      GL   L++L +  +LTL N       G    AAYG     + + Y+    +A
Sbjct: 245 LVGKGVPMGLQMVLISLAMIAMLTLVNGF-----GTDTAAAYGAA--LQLWNYVQMPAMA 297

Query: 300 LGT--QPIYSFNAGAGRFDRVKQARNIAFSMTLLTAALGLVLIYSRPEWLVYLF-AGDNP 356
           LG     + + N GAG + RV        +   L   L +  +     W + LF   D+P
Sbjct: 298 LGAACSTMAAQNVGAGLWARVDATARTGVAANFLMTGLLIAPLILFDRWTLALFLPSDSP 357

Query: 357 SL 358
           +L
Sbjct: 358 AL 359