Pairwise Alignments

Query, 448 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 463 a.a., Multi antimicrobial extrusion protein MatE (NCBI) from Rhodospirillum rubrum S1H

 Score =  142 bits (358), Expect = 2e-38
 Identities = 118/435 (27%), Positives = 203/435 (46%), Gaps = 22/435 (5%)

Query: 14  LQEPIAKLFWRYTIPTIASMLVTGVYVTIDGIFVGHYLGETGLAGMMLAYPVGAILYAIG 73
           L  PI +LF    +P    M + GV   +DGIFVGH++G   LA + LA+PV  +L A+ 
Sbjct: 14  LTVPIGRLFVSNALPMAVVMSMGGVLNVVDGIFVGHFIGSDALAAVSLAFPVAMVLSALT 73

Query: 74  AMIGMGSAALVSINLGQGNVAKARKLLGNAFSLCLLAGAFFALVGGVFSRDILIALGA-E 132
            + G G ++L++  LG G+   A ++      L L       ++  V    ++ ++ A  
Sbjct: 74  TLTGGGMSSLMARYLGAGDRGAAGRIFAETHGLVLAISVGLVVLWAVVGAALVDSMAAGN 133

Query: 133 GEILENANEYLFWYFALCHFPIISMAFTTLLRNDGRPSMVTFVLILGGVLNTFLDWLFIV 192
            ++   A +YL          ++       LRN+GR  ++  + +L  + N   + L IV
Sbjct: 134 PKVAGLAQDYLQIMILGAPAQLMLGVHADALRNEGRAGLIAALSVLVNLFNIGANGLGIV 193

Query: 193 VFPFGLAGAAIATMLSQAVTGLLCLQHFFGARTQLKINLEQMKLKLDNCINIARVGLPSF 252
           V   G++G+A+ T+ +QA+   L +     ++  L +++ + +  L     I R+GLP  
Sbjct: 194 VLGLGISGSALGTVAAQALGLALVIGVRGHSKGLLPLSVLRARNWLGAWSQIIRLGLPLC 253

Query: 253 LMNLYLSIVLTLHNTAFLWVGGPLH---VAAYGVVSYTEAFFYLIFEGIALGTQPIYSFN 309
           L  + +++V ++   +     G  +   VAAYGVV+    F +L    IAL TQ I   N
Sbjct: 254 LSFIGIAMVASVVIVSLRLSAGTDYNALVAAYGVVTRLLGFAFLPQMAIALATQSITGNN 313

Query: 310 AGAGRFDRVKQARNIAFSMTLLTAALGLVLIYSRPEWLVYLFAG--------DNPSLTPV 361
           AGAGR DR + A         L  ALG   ++  P  L  +FAG        D+P++   
Sbjct: 314 AGAGRTDRARAA---------LRLALGAAFLWCLPVVLAGVFAGTTLGSWFSDDPAVIDA 364

Query: 362 AIEGMRWYFWGLPMEGLILVGASFFQAINCSKQASILTGAK-LILIAAIIYCFAWAFGVI 420
             E +R         G +LV A +  A+    + + LT  K  +L   +I   +  FGV 
Sbjct: 365 VAEILRPMMLFYAASGPVLVLALYVHALGQPGRTAALTLVKPWLLTPLLILALSIGFGVS 424

Query: 421 GVWVSLATCSTMLVI 435
            +W++      ++++
Sbjct: 425 EMWLAFPMADAIILM 439