Pairwise Alignments

Query, 448 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 474 a.a., MATE family efflux transporter from Pedobacter sp. GW460-11-11-14-LB5

 Score = 92.0 bits (227), Expect = 4e-23
 Identities = 89/432 (20%), Positives = 169/432 (39%), Gaps = 19/432 (4%)

Query: 27  IPTIASMLVTGVYVTIDGIFVGHYLGET-GLAGMMLAYPVGAILYAIGAMIGMGSAALVS 85
           IP +  M +  V+  +D  FVGH    +  +  + L   V  I+Y++   + M + A+V+
Sbjct: 43  IPMMLEMAMESVFALVDLYFVGHLENSSHAIQTVGLTESVLTIIYSLAIGLSMAATAVVA 102

Query: 86  INLGQGNVAKARKLLGNAFSLCLLAGAFFALVGGVFSRDILIALGAEGEILENANEYLFW 145
             +G+ N   A K       + +      +++G ++++DIL+ +GA  E  E    ++  
Sbjct: 103 RRIGEKNPEAASKAGMQTIVIAVFVNIIISILGLIYAKDILLLMGASAETAEQGVTFVRI 162

Query: 146 YFALCHFPIISMAFTTLLRNDGRPSMVTFVLILGGVLNTFLDWLFI----VVFPFGLAGA 201
                   ++      + R  G  ++    L +  + N  L  +FI     +  FGL GA
Sbjct: 163 MMGGSIIIVLLFLINGIFRGAGNAAIAMRSLWIANIANIILCPIFINGLGPIPAFGLTGA 222

Query: 202 AIATMLSQAVTGLLCLQHFFGARTQLKINLEQMKLKLDNCINIARVGLPSFLMNLYLSIV 261
           AIAT + + +     + + F  +  LKI +       D    I ++  P+    +  S  
Sbjct: 223 AIATTIGRGLGVTYQVYNLFSGKNILKIRISHFLPDFDQIKAIVKIAAPAIFQFVIASCS 282

Query: 262 LTLHNTAFLWVGGPLHVAAYGVVSYTEAFFYLIFEGIALGTQPIYSFNAGAGRFDRVKQA 321
                      GG    A Y        FF L   G++     +   N GAG  DR +++
Sbjct: 283 WVFLAELVATTGGDTGSAGYQTALRLMMFFMLPAWGLSNAAATLVGQNLGAGHIDRAEKS 342

Query: 322 RNIAFSMTLLTAALGLVLIYSRPEWLVYLFAGDNPSLTPVAIEGMRWYFWGLPMEGLILV 381
                   ++  A+  VL  +        F  D  ++  VA + ++    G  + G  +V
Sbjct: 343 VFQTLKYIIVFMAVVSVLFLTCGHLFAAFFTSDE-NVIAVASKALKILSIGFVIYGAAMV 401

Query: 382 GASFFQAINCSKQASILTGAKLILIAAIIYCFAWAF--------GVIGVWVSLATCSTML 433
            +S F            T  K+ + A  ++    A+        G  GV++++ T    +
Sbjct: 402 FSSAFNG-----AGDTWTPTKINIFAFWLFQIPLAYFLAKFLEMGPTGVFIAIPTAEAGI 456

Query: 434 VIWMFIAMQRLK 445
            +  FI  ++ K
Sbjct: 457 AVAAFILFKKGK 468