Pairwise Alignments

Query, 514 a.a., transporter, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 489 a.a., amino acid/peptide transporter (RefSeq) from Shewanella sp. ANA-3

 Score = 58.9 bits (141), Expect = 4e-13
 Identities = 96/440 (21%), Positives = 176/440 (40%), Gaps = 73/440 (16%)

Query: 38  ELVERIAYYGVKASAGLYAK---APESAGGLGISLSDYGIIISLWAIMQTFVPVFTGGIS 94
           EL ER +YY ++A   LY       E   GLG + +D   +   +  +    P+  G ++
Sbjct: 24  ELWERFSYYAMRAILVLYLVDKVQSEGGHGLGWTQADAISLYGTFTGLVYLTPLIGGWLA 83

Query: 95  DR-VGYKETIFGSTIIKIMGYLTMAFFPTFWG-------FLSGSLLLAIGTGIFKPGIQG 146
           D  +G +  I     +   G   +   P  W        F  G   L +G G+FKP I  
Sbjct: 84  DTFLGQRRAIMIGGTLMAAGQFILGT-PHAWVPGMETEVFYVGLGTLILGNGLFKPNIST 142

Query: 147 TL--VLSTNRNNTSMAWGIFYQVVNIGGFLGPLVAVHMRQLSWDNVFYA---CAAI-ISL 200
            +  +     +    A+ IFY  +N+G FL  ++ V     ++D  F A   CA I + L
Sbjct: 143 MVGDLYEEGDHRRDGAFTIFYMGINVGAFLSGII-VGSVVAAYDGNFQAGFICAGIGMIL 201

Query: 201 NFLFLLTYTEP-------GKAERLARNQQIKSGDIKQETLWRDAWHELKKPIVIYYMLVF 253
           + +  L + +          A +L + +  + G++++E L +     +K  +V+    + 
Sbjct: 202 SLIIQLVFAQKLLGDIGRTPAAKLEKQKAAEKGEVRKEPLTKVERDRIKVIMVMGLFTII 261

Query: 254 SGFWFLFNSLFDVLPIHISEWVDTSV----IVTSLFGSEGT------SNGILQFWLGLNN 303
             FW  F     ++ +  +++ D  +    + T+ F S         +  +   W+ L  
Sbjct: 262 --FWAGFEQAGGLMNLFTNDFTDRMIGTWEVPTTWFQSLNAMFIVIFAPVVASIWVRLG- 318

Query: 304 EGTKVMPEGMLNLNAGLIMTSCFLVAALTAKYRITTVMLIGCLLSILAFVFIG----AFH 359
              K  P   +    GL++                  + +G L  I A V +G    A  
Sbjct: 319 ---KNEPNSPVKFALGLVL------------------LAVGFLFMIGAVVEMGGDASAKS 357

Query: 360 AAWFIVFAIAMFSIGEMMISPKKNEFMGNIAPEGKKAMYLG----FVMLPQGIGWGLEGY 415
           + W++V A    ++GE+ +SP     +  +AP    ++ +G    FV     IG G+ G 
Sbjct: 358 SMWWLVGAYFFHTMGELCLSPIGLSMVTKLAPLRIASLMMGSWFLFVAAANKIG-GVVGS 416

Query: 416 F----GPKLYEIYASKELFS 431
           F    G K  ++  +  +FS
Sbjct: 417 FIGHGGEKEEQLANAMAIFS 436