Pairwise Alignments

Query, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 950 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  458 bits (1179), Expect = e-133
 Identities = 253/684 (36%), Positives = 403/684 (58%), Gaps = 8/684 (1%)

Query: 312 ADREVLASREQLELVLSSSDLGVWDWDIRNDHIERNTRSADILGCDIDMLNANSRQWMDS 371
           A  E+  S  +L L L +S LG+WDWD++++ +  ++R   + G  ++  +A     +  
Sbjct: 268 AAEELGESEARLNLALDASGLGLWDWDLQHNRVH-HSRLEVVFGVGLEKRHAEDGSLLPD 326

Query: 372 IVAEDRPQVLQSIEAHIRGETPQHKMEYRLKTLNRDIRWILDTGKVVSRDANNNALRMCG 431
           I  +D P V  ++ AH++GE+ Q  +EYR    +     I D G+V+ RDA+  ALRM G
Sbjct: 327 IHPQDLPIVHATLIAHLKGESEQFAVEYRAVRADGSEICIEDRGRVIQRDASGRALRMIG 386

Query: 432 TYTDITEAKLIEESLKLSALVYDNSSEAMSVLDENGVIITVNAAFTDITGYSESEIRGQH 491
           T  DI++ +   E  +L+A V++ +SE M ++D    ++ VN A   ++GY   E+ G+ 
Sbjct: 387 TRRDISDVRRQAEQQRLAATVFEAASEGMVIMDATYRVLAVNDACCALSGYEREELLGRS 446

Query: 492 IRMMYCDLNGHEFYQQMNDDIRNKGEWQGEMRQRRRNNEEYVIWLTINTIKDKDGLPHRR 551
           I  +         Y+ M D +   G WQGE+ ++R++ E Y  W+ +  ++D D      
Sbjct: 447 IARIAGTPESQRQYEAMRDALERHGHWQGELIEKRKSGEVYPQWVQLREVRDSDDSVTHV 506

Query: 552 VALFSDITDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLSAEIKTADRNRNHFALMFLDL 611
           VA  SD++ +++ E  +    +YD LTGL NR +  E L    +   RN  + A++++DL
Sbjct: 507 VAFISDLSVRRKIEERLRYLTHYDDLTGLANRGLFKERLHEACQRVRRNGRNMAVLYIDL 566

Query: 612 DYFKEVNDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMADHKGIERV 671
           D FK +N++LGH   D LL E + RL + + +AD +ARL GDEF V+L +      +  +
Sbjct: 567 DRFKLLNESLGHEAADALLREVSRRLSTTLAEADTIARLSGDEFVVLLDAYGSLSSLAHL 626

Query: 672 AEHILRRIAEPYYLGEETTHISASIGITLYPDDSPSIEGLLKHADQAMYAAKDQGRNRFN 731
              +L+RI +P  + E+   ISASIG++L PD+S   E LL+ A+ AM  AK  G N   
Sbjct: 627 GSRLLQRIRKPMVIDEQELVISASIGVSLLPDNSRDAEALLRQANIAMQQAKHLGGNTLQ 686

Query: 732 YFTPSMQEYAKYRMRLIHDLRQAVLNKEFELHYQPIVTMATGEVLKAEALLRWFHPERGS 791
           +FT   Q  + + ++L + LR+A+   + E+ YQP +++A   +  AEAL+RW HPE G 
Sbjct: 687 FFTDRPQASSMHYLQLENQLRKALEVGQLEVFYQPRLSLADDSLEAAEALVRWRHPELGL 746

Query: 792 VSPAEFIPVAEDTGLIVEIGNWVFEQAARQSAQWRKTLGVEIQISVNKSPIQFRDEGALL 851
           V+PA+FIP+AE+TGLI+ +G +V  +A RQ+ QW++     I++SVN S  Q R +G  +
Sbjct: 747 VAPAQFIPLAEETGLIIPLGEFVLREACRQARQWQQDGLAAIRVSVNLSVKQLR-QGNFV 805

Query: 852 HNWLELLQQLDVTGAGVCVEITEGLLL---DASMGVTEKLLAYRDAGVQVSLDDFGTGYS 908
               ++L++  +    + +E+TE  LL   D ++ ++E+L   R  GV++++DDFGTG+S
Sbjct: 806 SLVRQVLEETGLPATMLELELTESQLLDDIDNAISISEQL---RALGVKLAIDDFGTGFS 862

Query: 909 SLAYLKKFDIDYLKIDQSFTRNIDTDENDHTLCEAIIVMAHKLGMKVIAEGVETEAQRQV 968
           SL+YLK+F +DY+KID+SF   ++    D  +  AII M H L  KV+AEGVET+AQ   
Sbjct: 863 SLSYLKRFPVDYVKIDRSFISELEHSSQDAAITRAIIAMVHSLERKVVAEGVETQAQMDF 922

Query: 969 LLRAGCDYGQGYLFSKPVSASEFA 992
           L    CD  QGYL S PV A +FA
Sbjct: 923 LKANHCDEIQGYLLSPPVPALQFA 946