Pairwise Alignments

Query, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 828 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) from Pseudomonas syringae pv. syringae B728a

 Score =  435 bits (1119), Expect = e-126
 Identities = 235/563 (41%), Positives = 343/563 (60%), Gaps = 1/563 (0%)

Query: 435 DITEAKLIEESLKLSALVYDNSSEAMSVLDENGVIITVNAAFTDITGYSESEIRGQHIRM 494
           DITE++ ++E L L+A V+++++E + + + +  I  VN AFT+ITGYSESE  G+  R+
Sbjct: 251 DITESRQMQEKLHLAATVFESTAEGVLITNTDQSISAVNRAFTEITGYSESEAIGKTPRL 310

Query: 495 MYCDLNGHEFYQQMNDDIRNKGEWQGEMRQRRRNNEEYVIWLTINTIKDKDGLPHRRVAL 554
           +    +   FY  M   +  +G WQGE+  RR+N E Y  WLTI+ +++KD L    VA+
Sbjct: 311 LASGQHDSAFYAAMWHQLAAEGHWQGEISNRRKNGELYPSWLTISAVRNKDNLLTHFVAV 370

Query: 555 FSDITDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLSAEIKTADRNRNHFALMFLDLDYF 614
           F+DI+  KQ++  +  QA++D LTGLPNR +    L A +  ++ + +  A++FLDLD F
Sbjct: 371 FADISSLKQAQARLDYQAHHDPLTGLPNRILFESRLQAALLHSEESGSLGAVLFLDLDRF 430

Query: 615 KEVNDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMADHKGIERVAEH 674
           K +ND+LGH +GDLLL   A RLK  +RD D VARLGGDEF V+L  +      + +A  
Sbjct: 431 KHINDSLGHPVGDLLLKGIAHRLKETLRDIDTVARLGGDEFIVLLPGLLQTSDAQAIANK 490

Query: 675 ILRRIAEPYYLGEETTHISASIGITLYPDDSPSIEGLLKHADQAMYAAKDQGRNRFNYFT 734
           +L   + P+  GE   +IS SIG  ++P D   +  L+K+AD AMY +K +GRNR   +T
Sbjct: 491 LLACFSTPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNADAAMYRSKAKGRNRVESYT 550

Query: 735 PSMQEYAKYRMRLIHDLRQAVLNKEFELHYQPIVTMATGEVLKAEALLRWFHPERGSVSP 794
             + + A  R+ L  +LR+A+   +  L YQP + + T  +  AEAL+RW HP  G V P
Sbjct: 551 CDLSDQASERIALEQELRRALERNQLTLAYQPKIDLLTHTMAGAEALIRWNHPTFGEVPP 610

Query: 795 AEFIPVAEDTGLIVEIGNWVFEQAARQSAQWRKTLGVEIQISVNKSPIQFRDEGALLHNW 854
             FIP+AE+ G+I++IG+WV EQA RQ   WRKT      +SVN +  Q R    LL   
Sbjct: 611 EHFIPLAEENGMILQIGDWVLEQACRQMGIWRKTCQPFGPLSVNLAGAQLRQTN-LLERI 669

Query: 855 LELLQQLDVTGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLK 914
            +LL    +    + +EITE  ++  +      L   +  GVQ+++DDFGTGYSSL+YLK
Sbjct: 670 EQLLTDNGLEPGCLQLEITENFIMSQTQEALAVLHQLKTLGVQLAIDDFGTGYSSLSYLK 729

Query: 915 KFDIDYLKIDQSFTRNIDTDENDHTLCEAIIVMAHKLGMKVIAEGVETEAQRQVLLRAGC 974
           +  +D LKIDQSF R +  D +D  +  AII +   L + VIAEGVE   Q+Q L   GC
Sbjct: 730 RLPLDILKIDQSFVRGLPEDTHDAAIVRAIIALGRSLQLTVIAEGVENSEQQQFLTSEGC 789

Query: 975 DYGQGYLFSKPVSASEFASKYLL 997
           +  QGY+ S P+ A EF +++LL
Sbjct: 790 EQIQGYIISLPLDAEEFRARFLL 812



 Score = 30.4 bits (67), Expect = 5e-04
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 207 GIAITGIDQKWIKVNPRLCQMLKYSEDELLHMTWKQL-THPDDLDADVAKFEQMLAGNID 265
           G+ IT  DQ    VN    ++  YSE E +  T + L +   D     A + Q+ A    
Sbjct: 275 GVLITNTDQSISAVNRAFTEITGYSESEAIGKTPRLLASGQHDSAFYAAMWHQLAAEGHW 334

Query: 266 NYELDKRFIAKNGSLVYTHMTVACKRTNHQVL 297
             E+  R   KNG L  + +T++  R    +L
Sbjct: 335 QGEISNR--RKNGELYPSWLTISAVRNKDNLL 364