Pairwise Alignments

Query, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1278 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) from Pseudomonas syringae pv. syringae B728a

 Score =  417 bits (1073), Expect = e-120
 Identities = 280/810 (34%), Positives = 426/810 (52%), Gaps = 35/810 (4%)

Query: 213  IDQKWIKVNPRLCQMLKYSEDELLHMT---WKQLTHPDDL-DADVAKFEQMLAGNIDNYE 268
            + Q+ I  N      L YS+ EL  M    W+ L HPDD       +  Q   G+ +  +
Sbjct: 468  LSQRVIYSNHHFGYTLGYSKSELHAMGEFFWEVLLHPDDARHYQDMRLRQRHHGHNELLQ 527

Query: 269  LDKRFIAKNG---SLVYTHMTVACKRTNHQVLLVISGYLDVTAQTLADREVLASREQLEL 325
               RF  +     S       +A    + +V  +I    D+T Q  + + +  S ++  +
Sbjct: 528  SVLRFRDRESNWRSFDIREQALAWDAED-RVTRIIGIAKDITEQVASSQSLRDSEQRYRM 586

Query: 326  VLSSSDLGVWDWDIR------NDHIERNTR-SADIL---GCDIDMLNANSRQWMDSIVAE 375
            +  S    ++  D R      +  +ER    SA+ +   G    + N       D++++ 
Sbjct: 587  LAESISDVIFSTDGRLAVNYVSPSVERALGYSAEWIIQNGWSAAIANPQQIVGFDALMSR 646

Query: 376  -----DRPQVLQSIEAHIRGETPQHKMEYRLKTLNRDIRWI-LDTGKVVSRDANNNALRM 429
                 D+PQ L    A +R E       +    L  D R I ++   V+    + N   +
Sbjct: 647  IDKVLDKPQEL----ARLREEVTTRM--FLFDCLRADGRKIPVELRVVLVWGEHGNFEGI 700

Query: 430  CGTYTDITEAKLIEESLKLSALVYDNSSEAMSVLDENGVIITVNAAFTDITGYSESEIRG 489
             G   DI++ +  E+ L+++A V+++S+ A+ + D  G I+  N AFT ++GY  +++  
Sbjct: 701  FGVGRDISQQRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLD 760

Query: 490  QHIRMMYCDLNGHEFYQQMNDDIRNKGEWQGEMRQRRRNNEEYVIWLTINTIKDKDGLPH 549
            Q   M+  +       + +   +  +G W+GE+R +RRN E Y  W+ I  + D +G   
Sbjct: 761  QLPGMLTVESEQETRLRHILRQLNGQGTWEGEIRLKRRNGEHYPAWVGITAVLDDEGDLA 820

Query: 550  RRVALFSDITDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLSAEIKTADRNRNHFALMFL 609
              V  FSDI+++K SE  I + A YD LT LPNR +  + L + ++ A+R +    LMFL
Sbjct: 821  SYVCFFSDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQAWVVLMFL 880

Query: 610  DLDYFKEVNDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVL----SSMADH 665
            DLD FK +ND+LGHA GD +L E A+RL +CV   D VAR+GGDEFT++L    S  A  
Sbjct: 881  DLDRFKPINDSLGHAAGDRMLQEMATRLLACVSVDDTVARMGGDEFTLLLEPDESREAAL 940

Query: 666  KGIERVAEHILRRIAEPYYLGEETTHISASIGITLYPDDSPSIEGLLKHADQAMYAAKDQ 725
                 VAE IL  +  P+ L      ++ASIGI L P D   +  L+K+AD AMY AK++
Sbjct: 941  NRAIHVAERILTSLITPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKER 1000

Query: 726  GRNRFNYFTPSMQEYAKYRMRLIHDLRQAVLNKEFELHYQPIVTMATGEVLKAEALLRWF 785
            G+N F ++   M   A  R+ L  DLR A+  KEF L YQP  +     +  AEALLRW 
Sbjct: 1001 GKNNFQFYQADMNATALERLELESDLRHALEQKEFTLFYQPQFSGDGKRLTGAEALLRWR 1060

Query: 786  HPERGSVSPAEFIPVAEDTGLIVEIGNWVFEQAARQSAQWRKTLGVEIQISVNKSPIQFR 845
            HP RG V P +FIPV E+ GL+VE+G+WV  +A RQ   W +      ++SVN S  QF 
Sbjct: 1061 HPRRGLVPPNDFIPVLEELGLVVEVGDWVLAEACRQLKHWHQARVRVPKVSVNISARQFS 1120

Query: 846  DEGALLHNWLELLQQLDVTGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGT 905
            D G L      +L+Q  ++ A + +E+TE +L+       + L   ++ G+ +++DDFGT
Sbjct: 1121 D-GQLGKRIAHILEQAGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGT 1179

Query: 906  GYSSLAYLKKFDIDYLKIDQSFTRNIDTDENDHTLCEAIIVMAHKLGMKVIAEGVETEAQ 965
            GYSSL YLK+F ID LKID++F   + + E D  +  AII MAH L + VIAEGVET  Q
Sbjct: 1180 GYSSLNYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQ 1239

Query: 966  RQVLLRAGCDYGQGYLFSKPVSASEFASKY 995
             + L    CD  QGYLF +P+  ++F +++
Sbjct: 1240 LEFLREHDCDEVQGYLFGRPMPPAQFEAQF 1269