Pairwise Alignments

Query, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1484 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  437 bits (1123), Expect = e-126
 Identities = 253/688 (36%), Positives = 396/688 (57%), Gaps = 13/688 (1%)

Query: 313  DREVLASREQLELVLSSSDLGVWDWDIRNDHIERNTRSADILGCDIDMLNANSRQWMDS- 371
            ++++  S ++L   L  SD  +W+W     H E  T   +  G             MD  
Sbjct: 801  NKKLKESEDRLRQSLRGSDSELWEW-----HSESETFLLENRGGYFPDRGDAFELKMDEF 855

Query: 372  -IVAEDRPQVLQSIEAHIRGETPQHKMEYRLKTLNRDIRWILDTGKVVSRD-ANNNALRM 429
             I A+D+ +V  + +  +  +  +  ++YR +  +    W    G+ +  D  +    ++
Sbjct: 856  PIYADDQEKVFTAWKRLLSKQDDRLDVDYRYRRPDESWGWTRVRGRALEFDPVSGRVKKV 915

Query: 430  CGTYTDITEAKLIEESLKLSALVYDNSSEAMSVLDENGVIITVNAAFTDITGYSESEIRG 489
             G YTDIT  +++E+ +KL A  + N+SE + +LD +  +   N A   I G S  ++  
Sbjct: 916  AGIYTDITTQRMLEDDVKLLAQAFANTSEGVLILDADERVRVSNKAAQSILGMSADDLID 975

Query: 490  QHIRMMYCDLNGHEFYQQMNDDIRNKGEWQGEMRQRRRNNEEYVIWLTINTIKDKDGLPH 549
            ++   +    +  +   ++N  +     W GE   +        +WL ++T+KD  G   
Sbjct: 976  RYFAQLVH--SSEDRSDEINILLEQGITWTGEHEFQCAEGLICPVWLNLSTMKDDRGNIS 1033

Query: 550  RRVALFSDITDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLSAEIKTADRNRNHFALMFL 609
              VA+FSDIT++KQ+E  + + ANYD LTGLPNR +    L+  I  A++  +  AL+FL
Sbjct: 1034 HYVAVFSDITERKQTEADLRRLANYDVLTGLPNRSLFAARLAKCIHRAEQTEDKLALIFL 1093

Query: 610  DLDYFKEVNDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMADHKGIE 669
            DLD FK VND+ GH+MGD LL+E ASRL+SCV +   + R GGDEF +++  M D   + 
Sbjct: 1094 DLDRFKNVNDSYGHSMGDALLVEAASRLQSCVSENHTLCRFGGDEFVILMRDMVDIDEVN 1153

Query: 670  RVAEHILRRIAEPYYLGEETTHISASIGITLYPDDSPSIEGLLKHADQAMYAAKDQGRNR 729
             + E ++R+I +P+ L      IS SIG++L+PDD+   E L+K+ADQAMY AK++GR  
Sbjct: 1154 HLCEALIRQIEKPFELYGREFFISTSIGVSLWPDDAKQPEVLIKNADQAMYHAKEEGRGN 1213

Query: 730  FNYFTPSMQEYAKYRMRLIHDLRQAVLNKEFELHYQP-IVTMATGEVLKAEALLRWFHPE 788
            F YF+      A Y ++L  +LR+A+  +EFEL++QP I  +   +V+  EALLRW HP+
Sbjct: 1214 FQYFSAERNAEALYHLKLEAELRKAMDRQEFELYFQPQIDILKDDKVVGMEALLRWHHPK 1273

Query: 789  RGSVSPAEFIPVAEDTGLIVEIGNWVFEQAARQSAQWRKTLGVEIQISVNKSPIQFRDEG 848
             G + P  FI VAE  GLI+EI  WV +QA  Q A+W +  G E+++SVN S + FR + 
Sbjct: 1274 EGYIRPDIFIRVAESCGLIIEIDRWVIKQACLQGAKWAEHFGDELKLSVNVSAVHFR-QP 1332

Query: 849  ALLHNWLELLQQLDVTGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYS 908
              + +  + L++  +    + +EITEG+L+       + L A R+ G++V++DDFGTGYS
Sbjct: 1333 DFIQDVQQALKESGMPAKMLGLEITEGVLMKELHVAKDHLKALREIGIEVAIDDFGTGYS 1392

Query: 909  SLAYLKKFDIDYLKIDQSFTRNIDTDENDHTLCEAIIVMAHKLGMKVIAEGVETEAQRQV 968
            SLAYL+ FD+  LKID+SF  +I T+E D  +  +II +A  L +KV+AEGVET+ Q + 
Sbjct: 1393 SLAYLRSFDVSTLKIDRSFLIDIATNEADQAIASSIIELARNLKLKVVAEGVETQEQLEQ 1452

Query: 969  LLRAGCDYGQGYLFSKPVSASEFASKYL 996
            +   GC   QGY F+KP++  EF  KYL
Sbjct: 1453 VFSRGCYIIQGYYFAKPMTIDEF-EKYL 1479