Pairwise Alignments

Query, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1010 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score = 1302 bits (3370), Expect = 0.0
 Identities = 639/995 (64%), Positives = 789/995 (79%)

Query: 2    QNAALLLALVFLYDAIPKKHQRQYFLLWRLGIGVLIGGIGVAIMSTPWMYEPGIIFDTRS 61
            QNAALLL +VF+YDA+P+ H+ +YFLLWRL +G +IGG+ V  M T W Y+PG+  DTRS
Sbjct: 11   QNAALLLIMVFIYDAVPRHHRSEYFLLWRLIMGAVIGGVTVLTMMTSWEYQPGVFIDTRS 70

Query: 62   VLLCVSGLFFGGLPTAIAVVITALYRLSIGGVAMWVGVGVIITSGLIGVIWRHYRKAHLA 121
            V+L +SGLFFGGLPT +A  +   YRL  GG  M VGV VI+ S L G +WR+YRK  +A
Sbjct: 71   VVLAISGLFFGGLPTFVAASVACAYRLFQGGDGMLVGVTVILVSALFGSLWRYYRKTTIA 130

Query: 122  SISGTEVISFAFLVHLVMLSWFFLLPGQHVVPVLSKITLPILLIYPLATWLLSRLLSRRF 181
             +S  E+  F FL+H   LS  F+LP    V +L +I LP++LI+P+ T LL  +L+RR 
Sbjct: 131  DLSFIELYLFGFLLHFSTLSLLFILPFSMFVDLLVQIALPVMLIFPIVTALLGMMLARRL 190

Query: 182  ELERDEQIRLQDDFLFRSQFNIGNIGIAITGIDQKWIKVNPRLCQMLKYSEDELLHMTWK 241
            E+ERD +I+LQDDF+FRSQFN+GN+GIAIT +DQ WIKVNPRLC+MLKYSE ELL+ TW 
Sbjct: 191  EVERDAKIQLQDDFIFRSQFNVGNMGIAITSVDQHWIKVNPRLCKMLKYSETELLNRTWT 250

Query: 242  QLTHPDDLDADVAKFEQMLAGNIDNYELDKRFIAKNGSLVYTHMTVACKRTNHQVLLVIS 301
            +LT+ +DL AD+ +F++ML G ID YE+DKRF+AK+G +VYTH+TVAC+R ++ V +VI+
Sbjct: 251  ELTYFEDLKADMTQFQRMLKGEIDAYEMDKRFVAKDGEIVYTHLTVACRRNHNMVDMVIA 310

Query: 302  GYLDVTAQTLADREVLASREQLELVLSSSDLGVWDWDIRNDHIERNTRSADILGCDIDML 361
            G +D+T    AD  +  S+E+L LVL SSDLG+WDWDI+++  +RN   A +LGCD++ L
Sbjct: 311  GLIDITEHKRADMAMRTSQERLALVLESSDLGMWDWDIKSNETKRNPWCAKVLGCDLERL 370

Query: 362  NANSRQWMDSIVAEDRPQVLQSIEAHIRGETPQHKMEYRLKTLNRDIRWILDTGKVVSRD 421
            N +SR W+D+I  +DR  VL SI+ H++GET +H +EYRL +L+ +  WILDTGKVVSRD
Sbjct: 371  NRDSRIWIDAIHPQDRMAVLNSIDRHLKGETQKHYIEYRLISLSGEEHWILDTGKVVSRD 430

Query: 422  ANNNALRMCGTYTDITEAKLIEESLKLSALVYDNSSEAMSVLDENGVIITVNAAFTDITG 481
             N    RMCG ++DITE K ++ESL+L+A VY+NSSEAMSV D  G IIT+NAAFT ITG
Sbjct: 431  RNGLPTRMCGVHSDITEQKKVQESLELAASVYNNSSEAMSVQDHKGHIITINAAFTAITG 490

Query: 482  YSESEIRGQHIRMMYCDLNGHEFYQQMNDDIRNKGEWQGEMRQRRRNNEEYVIWLTINTI 541
            YS+ E   Q+IR++         Y +MN  IR+ G WQGE+  + ++ EEY++WLTINTI
Sbjct: 491  YSQEEALTQNIRILQSSRTPRSQYDEMNSAIRDTGYWQGELWIKNKSGEEYMVWLTINTI 550

Query: 542  KDKDGLPHRRVALFSDITDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLSAEIKTADRNR 601
             D+ G  +RRVALFSDIT+KK++EH+IWKQANYD LTGLPNRRMLLEYL+ EI   DRN 
Sbjct: 551  FDQHGQVYRRVALFSDITEKKEAEHIIWKQANYDPLTGLPNRRMLLEYLNTEILRIDRNH 610

Query: 602  NHFALMFLDLDYFKEVNDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSS 661
            +HFALMFLDLD+FKEVNDTLGH MGDLLL ETA RLK C+R++DVVARLGGDEFTVVLS 
Sbjct: 611  SHFALMFLDLDFFKEVNDTLGHDMGDLLLQETAKRLKGCIRESDVVARLGGDEFTVVLSG 670

Query: 662  MADHKGIERVAEHILRRIAEPYYLGEETTHISASIGITLYPDDSPSIEGLLKHADQAMYA 721
            +    G+ERVA+ IL RIAEPY LG+ET +ISASIGIT+YPDD+ SIEGLLKHADQAMYA
Sbjct: 671  IDSPSGVERVAQSILERIAEPYSLGDETAYISASIGITIYPDDATSIEGLLKHADQAMYA 730

Query: 722  AKDQGRNRFNYFTPSMQEYAKYRMRLIHDLRQAVLNKEFELHYQPIVTMATGEVLKAEAL 781
            AK+QGRNRF+YFTPSMQEYA+YRM LI DLR A+  KEFEL YQPIV M    V KAEAL
Sbjct: 731  AKEQGRNRFHYFTPSMQEYARYRMALIKDLRNAINRKEFELFYQPIVDMNKLGVYKAEAL 790

Query: 782  LRWFHPERGSVSPAEFIPVAEDTGLIVEIGNWVFEQAARQSAQWRKTLGVEIQISVNKSP 841
            +RW HP+RG VSP EFIPVAE+TGLI EIGNWVFE+AA+QSA+WR   GVEIQIS+NKSP
Sbjct: 791  IRWVHPQRGLVSPGEFIPVAEETGLINEIGNWVFEKAAQQSARWRTQHGVEIQISINKSP 850

Query: 842  IQFRDEGALLHNWLELLQQLDVTGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLD 901
            IQFRDEG    +WL LL+ L+++   +CVEITEGLLLDASMGVT+KLLAYRDAG+QVSLD
Sbjct: 851  IQFRDEGDTFSDWLALLRHLELSSNAICVEITEGLLLDASMGVTDKLLAYRDAGIQVSLD 910

Query: 902  DFGTGYSSLAYLKKFDIDYLKIDQSFTRNIDTDENDHTLCEAIIVMAHKLGMKVIAEGVE 961
            DFGTGYSSLAYLKKFDIDYLKIDQSFTRN+++D +   LCEAIIVMAHKLG+KVIAEGVE
Sbjct: 911  DFGTGYSSLAYLKKFDIDYLKIDQSFTRNLESDSDGVALCEAIIVMAHKLGIKVIAEGVE 970

Query: 962  TEAQRQVLLRAGCDYGQGYLFSKPVSASEFASKYL 996
            T+ Q  +L  AGCD+ QGYL+SKPVS  EF   Y+
Sbjct: 971  TQFQHDILASAGCDFAQGYLYSKPVSLPEFERLYV 1005